Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 8.9e-54 213.4 111 100.0
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 6.9e-38 160.6 107 80.4
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 4.2e-35 151.4 113 74.3
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 3.3e-32 141.7 105 68.6
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 7.1e-27 124.0 114 64.9
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.6e-26 121.3 114 65.8
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 2.8e-23 112.1 113 58.4
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 1.8e-22 109.4 112 58.9
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.7e-20 102.8 108 55.6
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.4e-19 99.8 106 54.7
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.4e-19 99.8 102 58.8
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.5e-19 99.0 105 53.3
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 4.2e-19 98.2 102 57.8
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.2e-19 98.2 114 53.5
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.7e-18 95.5 108 50.9
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 2.7e-18 95.5 109 55.0
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.0e-18 94.4 105 51.4
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.0e-17 93.6 107 49.5
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 3.0e-17 92.0 107 50.5
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 8.7e-17 90.5 103 48.5
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 8.7e-17 90.5 103 48.5
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 1.5e-16 89.7 107 44.9
Medtr5g092085 Medicago truncatula HOM05D004992 ORTHO05D006004 2.5e-16 89.0 84 60.7
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 5.7e-16 87.8 103 51.5
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 7.4e-16 87.4 111 45.9
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 9.7e-16 87.0 103 51.5
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 1.6e-15 86.3 105 42.9
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.8e-15 85.5 109 46.8
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 8.2e-15 84.0 101 51.5
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.4e-14 83.2 108 45.4
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 5.3e-14 81.3 108 47.2
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 6.9e-14 80.9 103 49.5
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 9.0e-14 80.5 107 43.9
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 9.0e-14 80.5 104 51.9
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.2e-13 80.1 108 43.5
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.0e-13 79.3 109 45.9
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.5e-13 78.2 103 46.6
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.5e-13 78.2 103 46.6
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 4.5e-13 78.2 109 45.0
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 5.9e-13 77.8 107 47.7
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 7.6e-13 77.4 106 45.3
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 7.6e-13 77.4 102 45.1
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 1.0e-12 77.0 106 43.4
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.0e-12 77.0 107 45.8
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 1.0e-12 77.0 110 45.5
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.3e-12 76.6 108 43.5
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 1.3e-12 76.6 106 44.3
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.7e-12 76.3 111 42.3
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.7e-12 76.3 110 44.5
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 2.2e-12 75.9 116 44.8
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 2.9e-12 75.5 109 43.1
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.9e-12 75.5 107 46.7
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 2.9e-12 75.5 109 42.2
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 2.9e-12 75.5 111 44.1
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 3.8e-12 75.1 109 42.2
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.8e-12 75.1 107 45.8
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 3.8e-12 75.1 107 45.8
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.8e-12 75.1 100 44.0
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 3.8e-12 75.1 107 43.0
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 5.0e-12 74.7 107 39.3
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 5.0e-12 74.7 108 41.7
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 6.5e-12 74.3 108 41.7
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 8.5e-12 73.9 100 43.0
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.1e-11 73.6 109 41.3
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 1.1e-11 73.6 109 40.4
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.4e-11 73.2 109 42.2
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 1.9e-11 72.8 108 43.5
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 2.5e-11 72.4 110 44.5
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 2.5e-11 72.4 115 43.5
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.5e-11 72.4 109 43.1
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 3.2e-11 72.0 109 44.0
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.2e-11 72.0 108 40.7
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 3.2e-11 72.0 108 40.7
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 5.5e-11 71.2 110 36.4
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 7.2e-11 70.9 109 43.1
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 9.4e-11 70.5 108 43.5
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.4e-11 70.5 108 39.8
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.2e-10 70.1 103 43.7
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.2e-10 70.1 109 45.0
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 1.6e-10 69.7 131 36.6
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.1e-10 69.3 107 41.1
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 2.1e-10 69.3 111 42.3
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 4.6e-10 68.2 104 39.4
VMungo0647G1570 Vigna mungo HOM05D004992 ORTHO05D006004 4.6e-10 68.2 73 56.2
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 6.1e-10 67.8 112 39.3
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 7.9e-10 67.4 102 43.1
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.0e-09 67.0 105 41.0
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.8e-09 66.2 109 41.3
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 3.0e-09 65.5 122 40.2
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 5.1e-09 64.7 109 41.3
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 6.7e-09 64.3 107 39.3
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 6.7e-09 64.3 109 39.4
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 8.8e-09 63.9 107 38.3
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.1e-08 63.5 108 42.6
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.5e-08 63.2 104 37.5
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 2.5e-08 62.4 112 40.2
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 2.5e-08 62.4 118 33.1
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 2.5e-08 62.4 103 40.8
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 3.3e-08 62.0 106 38.7
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 3.3e-08 62.0 101 36.6
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 5.7e-08 61.2 104 37.5
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 9.7e-08 60.5 104 37.5
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.3e-07 60.1 130 36.9
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.3e-07 60.1 87 44.8
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.3e-07 60.1 83 44.6
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 1.3e-07 60.1 105 36.2
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 1.7e-07 59.7 110 41.8
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 2.2e-07 59.3 102 39.2
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 3.7e-07 58.5 88 42.0
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.7e-07 58.5 105 34.3
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 3.7e-07 58.5 102 35.3
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 3.7e-07 58.5 105 41.0
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 4.8e-07 58.2 109 36.7
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 4.8e-07 58.2 98 39.8
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 8.2e-07 57.4 125 38.4
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 8.2e-07 57.4 120 40.0
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.1e-06 57.0 110 37.3
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 1.4e-06 56.6 98 38.8
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.8e-06 56.2 105 33.3
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.8e-06 56.2 127 32.3
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 5.3e-06 54.7 110 36.4
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 9.1e-06 53.9 89 41.6


User provided reference genes

Program Settings