Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.0e-161 573.5 325 100.0
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.0e-110 404.1 307 80.8
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.1e-103 379.8 334 71.0
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.4e-94 350.5 295 75.6
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 4.1e-91 339.0 287 72.1
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.9e-75 287.0 333 61.9
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.7e-73 280.4 217 72.4
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 6.6e-73 278.5 252 67.5
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.5e-72 277.3 336 57.7
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 1.6e-71 273.9 334 55.4
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 7.1e-67 258.5 332 56.6
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 1.3e-65 254.2 199 69.8
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 3.6e-63 246.1 200 65.5
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.8e-62 243.8 238 58.0
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 2.4e-62 243.4 245 57.6
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 3.1e-62 243.0 303 54.8
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.2e-61 241.1 216 65.3
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 4.5e-61 239.2 219 61.6
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.2e-60 236.9 195 65.6
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 8.4e-60 235.0 203 62.1
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.7e-58 229.9 227 59.9
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 3.9e-57 226.1 201 63.2
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.9e-56 223.8 209 60.8
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 5.6e-56 222.2 223 59.2
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 4.8e-55 219.2 241 54.4
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 3.1e-54 216.5 238 52.9
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 6.9e-54 215.3 249 52.2
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.6e-53 213.4 305 46.2
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 6.4e-52 208.8 316 48.7
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.4e-52 208.8 207 58.5
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 8.4e-52 208.4 207 58.5
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.1e-51 208.0 249 52.2
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.1e-51 208.0 211 57.8
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.9e-51 207.2 146 75.3
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.4e-51 206.8 200 59.5
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 4.2e-51 206.1 208 56.2
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 5.5e-51 205.7 212 57.1
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.6e-50 204.1 256 52.0
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.7e-50 203.4 238 53.8
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 3.5e-50 203.0 214 54.7
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.5e-50 203.0 257 52.5
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 7.9e-50 201.8 150 70.7
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 7.9e-50 201.8 225 53.8
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.0e-49 201.4 152 69.7
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.8e-49 200.7 249 52.6
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.9e-49 199.5 238 52.9
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 5.1e-49 199.1 198 60.1
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 6.7e-49 198.7 318 45.9
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 6.7e-49 198.7 352 46.9
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.5e-48 197.6 209 55.0
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.5e-48 197.6 247 53.4
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.5e-48 197.6 247 53.4
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.9e-48 197.2 151 68.9
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 2.5e-48 196.8 211 58.8
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.5e-48 196.8 212 59.0
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.3e-48 196.4 212 59.4
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.3e-48 196.1 212 58.5
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 9.6e-48 194.9 132 79.5
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.3e-47 194.5 319 44.8
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 2.1e-47 193.7 235 50.6
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 2.1e-47 193.7 235 50.6
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 2.8e-47 193.4 219 53.0
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.8e-47 193.4 156 69.9
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 3.7e-47 193.0 233 50.6
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 3.7e-47 193.0 253 51.8
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 2.4e-46 190.3 239 49.8
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.2e-45 188.0 208 54.3
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.2e-45 188.0 321 43.0
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.5e-45 187.6 208 54.3
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.5e-45 187.6 207 57.0
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 1.5e-45 187.6 182 59.3
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 3.4e-45 186.4 179 62.0
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.0e-44 184.9 338 43.2
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.3e-44 184.5 152 68.4
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 1.3e-44 184.5 169 64.5
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 2.2e-44 183.7 144 67.4
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 3.8e-44 183.0 263 48.3
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 4.9e-44 182.6 145 68.3
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.1e-43 181.4 328 43.0
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.4e-43 181.0 245 49.8
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.5e-43 180.3 152 67.1
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 4.2e-43 179.5 340 40.9
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 7.1e-43 178.7 309 44.3
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 7.1e-43 178.7 144 66.0
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 9.3e-43 178.3 106 84.9
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 9.3e-43 178.3 108 83.3
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.6e-42 177.6 232 49.1
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 1.6e-42 177.6 148 66.9
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 2.7e-42 176.8 244 52.5
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.0e-41 174.9 205 52.2
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.3e-41 174.5 330 43.0
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.3e-41 174.5 106 83.0
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 5.1e-41 172.6 236 48.7
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 8.7e-41 171.8 143 65.0
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 3.3e-40 169.9 109 78.0
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 9.6e-40 168.3 131 68.7
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 3.7e-39 166.4 113 71.7
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 8.2e-39 165.2 110 76.4
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.8e-38 164.1 132 66.7
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.4e-38 163.7 111 77.5
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 4.1e-38 162.9 151 58.9
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.5e-37 161.0 195 55.9
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 3.4e-37 159.8 345 39.1
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 5.9e-37 159.1 312 44.9
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.0e-36 158.3 143 59.4
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.3e-36 157.9 103 77.7
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 2.9e-36 156.8 221 46.2
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.1e-35 154.8 157 54.8
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.4e-35 154.5 150 54.0
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 7.2e-35 152.1 143 55.2
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.2e-34 151.4 110 69.1
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.6e-34 149.4 132 65.9
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 7.9e-34 148.7 95 80.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 3.9e-33 146.4 193 48.2
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 5.1e-33 146.0 330 40.6
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.1e-30 138.3 80 83.8
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.4e-30 137.1 142 54.9
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 3.1e-30 136.7 90 70.0
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 9.1e-30 135.2 91 76.9
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 9.1e-30 135.2 259 39.0
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.0e-29 134.0 144 55.6
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.0e-29 134.0 144 55.6
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 7.7e-29 132.1 195 48.2
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.2e-28 130.6 139 55.4
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.5e-27 127.1 200 46.5
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.6e-26 124.4 113 60.2
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.7e-26 123.6 108 64.8
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 7.9e-26 122.1 108 64.8
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.0e-25 121.7 241 36.9
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.0e-25 120.2 141 53.9
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.1e-24 118.2 110 57.3
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.3e-24 116.7 121 54.5
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.3e-23 114.8 102 56.9
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 4.1e-22 109.8 222 41.0
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 9.1e-22 108.6 104 56.7
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.4e-21 106.7 106 56.6
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 3.4e-21 106.7 105 53.3
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 5.9e-21 105.9 104 55.8
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.7e-20 104.4 102 56.9
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.7e-20 104.4 105 54.3
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 2.2e-20 104.0 156 42.3
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 3.8e-20 103.2 101 55.4
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 3.8e-20 103.2 105 54.3
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 6.5e-20 102.4 110 51.8
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 8.5e-20 102.1 107 53.3
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 7.2e-19 99.0 131 47.3
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 1.2e-18 98.2 91 52.7
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.6e-18 96.7 171 45.6
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.6e-18 96.7 194 41.8
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 6.1e-18 95.9 203 35.5
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.8e-17 94.4 52 84.6
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 2.8e-15 87.0 144 43.1
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 1.6e-13 81.3 55 76.4
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 5.9e-13 79.3 96 49.0
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 1.0e-12 78.6 143 32.9
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.0e-12 78.6 116 39.7
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.3e-12 78.2 108 41.7
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 2.2e-12 77.4 81 55.6
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 5.0e-12 76.3 54 72.2
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.5e-11 73.9 154 42.9
arahy.Tifrunner.gnm1.ann1.EPLR59 Arachis hypogaea HOM05D004041 ORTHO05D004564 4.2e-11 73.2 84 59.5
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 5.5e-11 72.8 65 58.5
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.2e-10 71.6 67 53.7
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 1.7e-07 61.2 64 48.4
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 8.2e-07 58.9 55 50.9
TAR626G1323 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.8e-06 57.8 137 40.9
Cfa013242 Carpinus fangiana HOM05D063909 ORTHO05D004564 9.1e-06 55.5 162 35.2


User provided reference genes

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