Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 7.4e-187 657.1 349 100.0
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 7.2e-134 481.1 349 79.7
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.2e-112 410.6 350 68.3
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 5.9e-112 408.3 331 71.3
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 3.0e-111 406.0 351 67.0
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 5.0e-111 405.2 351 67.0
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 1.4e-108 397.1 380 62.9
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 6.8e-108 394.8 344 68.9
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.2e-96 357.5 348 62.9
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 1.0e-95 354.4 346 64.5
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.7e-95 353.6 346 63.0
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 1.3e-90 337.4 346 60.4
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.9e-90 336.3 346 59.5
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 2.4e-89 333.2 362 57.2
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 2.4e-89 333.2 362 56.9
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 8.6e-87 324.7 212 82.1
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 6.2e-85 318.5 348 55.2
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 3.1e-84 316.2 349 55.0
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.2e-82 310.1 257 69.6
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 6.4e-82 308.5 350 54.0
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 4.6e-80 302.4 359 51.8
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 7.8e-80 301.6 351 53.3
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 1.7e-79 300.4 382 50.0
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 2.3e-79 300.1 198 80.3
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 2.5e-78 296.6 343 51.6
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 4.3e-78 295.8 344 53.5
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 2.8e-77 293.1 344 52.6
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 3.6e-77 292.7 351 51.0
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 1.8e-76 290.4 350 52.6
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.2e-75 287.7 346 53.2
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.5e-75 287.3 339 53.7
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 4.5e-75 285.8 346 52.6
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 7.6e-75 285.0 349 51.0
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 9.9e-75 284.6 349 52.4
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 1.7e-74 283.9 351 51.0
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.7e-74 283.9 347 50.1
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 2.2e-74 283.5 259 61.0
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.2e-74 283.5 377 49.9
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.9e-74 283.1 338 53.6
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 1.4e-73 280.8 344 52.6
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.4e-73 280.8 347 50.1
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.4e-73 280.8 358 51.4
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.9e-73 280.4 349 49.9
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 1.9e-73 280.4 353 48.2
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 3.2e-73 279.6 342 49.4
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 4.2e-73 279.3 360 49.4
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 7.1e-73 278.5 345 51.3
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 1.2e-72 277.7 348 49.1
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 4.6e-72 275.8 341 50.7
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.0e-71 274.6 216 69.0
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 1.3e-71 274.2 212 77.8
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 1.1e-70 271.2 347 49.9
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.1e-70 271.2 247 62.3
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 4.3e-70 269.2 340 50.3
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 9.6e-70 268.1 252 57.9
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 1.3e-69 267.7 351 47.0
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 1.3e-69 267.7 259 57.5
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 1.3e-69 267.7 216 65.7
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 8.1e-69 265.0 352 48.6
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 8.1e-69 265.0 355 47.6
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.4e-68 264.2 340 50.0
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 3.1e-68 263.1 332 50.6
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 6.9e-68 261.9 360 49.2
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 9.0e-68 261.5 364 47.3
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 2.0e-67 260.4 353 45.6
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 5.8e-67 258.8 354 44.6
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.9e-66 256.5 249 56.6
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 8.4e-66 255.0 336 48.5
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 7.1e-65 251.9 341 45.2
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.6e-64 250.8 187 75.4
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 4.6e-64 249.2 337 48.4
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 7.9e-64 248.4 285 47.7
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.3e-63 247.7 254 56.3
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 6.7e-63 245.4 370 44.9
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 1.1e-62 244.6 358 44.4
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 9.6e-62 241.5 264 50.0
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 4.8e-61 239.2 253 53.0
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 1.1e-60 238.0 354 45.5
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.4e-60 237.7 256 52.0
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.4e-60 237.7 350 45.7
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.8e-60 237.3 281 49.1
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 4.0e-60 236.1 249 53.0
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 2.6e-59 233.4 351 43.6
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.0e-58 231.5 344 43.3
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 2.9e-58 229.9 246 52.0
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 3.8e-58 229.6 248 51.6
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 4.9e-58 229.2 249 51.0
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.1e-57 228.0 254 52.0
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.9e-57 227.3 412 41.3
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 2.7e-56 223.4 317 45.4
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 4.6e-56 222.6 254 50.8
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 3.9e-55 219.5 253 50.2
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 3.9e-55 219.5 253 50.2
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 3.9e-55 219.5 253 50.2
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 8.7e-55 218.4 246 51.2
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 1.1e-54 218.0 246 50.8
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.5e-54 216.9 344 40.7
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 6.3e-53 212.2 254 48.8
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 2.4e-52 210.3 252 48.8
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 7.6e-51 205.3 349 41.0
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.0e-50 202.6 194 58.2
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.4e-49 201.1 351 39.9
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 4.2e-49 199.5 185 61.6
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 7.2e-49 198.7 351 42.2
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.2e-49 198.7 350 40.9
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.2e-48 198.0 183 59.6
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 3.9e-47 193.0 359 36.5
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 5.1e-47 192.6 242 50.0
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 3.3e-46 189.9 347 43.2
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 3.7e-45 186.4 214 50.9
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 2.4e-44 183.7 339 39.5
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 2.4e-44 183.7 123 82.1
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 4.1e-44 183.0 258 45.3
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 4.1e-44 183.0 353 37.4
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.6e-43 180.3 386 36.5
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 4.5e-43 179.5 233 44.2
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.7e-42 177.6 246 44.3
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 1.7e-42 177.6 219 45.2
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 2.9e-42 176.8 337 36.8
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 7.2e-41 172.2 193 52.3
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 7.9e-40 168.7 184 53.8
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 1.0e-39 168.3 217 47.0
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 2.4e-36 157.1 224 46.4
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 2.4e-36 157.1 238 44.5
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 2.0e-35 154.1 330 36.4
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 2.0e-35 154.1 276 38.4
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 1.4e-31 141.4 84 85.7
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 2.2e-29 134.0 224 42.4
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 2.2e-29 134.0 175 47.4
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 7.0e-28 129.0 200 40.5
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 5.0e-26 122.9 213 38.5
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.0e-23 115.2 195 38.5
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.0e-23 115.2 234 41.5
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 1.2e-22 111.7 105 58.1
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 9.7e-22 108.6 123 56.1
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 8.2e-21 105.5 85 62.4
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 2.7e-19 100.5 82 58.5
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 7.7e-19 99.0 129 48.8
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 7.7e-19 99.0 129 48.8
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 1.1e-17 95.1 88 58.0
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 4.2e-17 93.2 115 47.0
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.5e-14 84.7 224 29.5
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 3.4e-14 83.6 81 58.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 9.8e-14 82.0 87 51.7
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 1.1e-12 78.6 311 28.6
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 9.1e-12 75.5 196 31.1
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 1.6e-11 74.7 80 52.5
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 2.7e-11 73.9 82 51.2
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.3e-10 70.9 56 62.5
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 1.1e-09 68.6 111 43.2
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.2e-08 65.1 49 63.3
arahy.Tifrunner.gnm1.ann1.DT6YRW Arachis hypogaea HOM05D004411 ORTHO05D005569 8.9e-07 58.9 81 46.9


User provided reference genes

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