Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 0.0e+00 2385.1 1223 100.0
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 0.0e+00 1502.6 1272 67.9
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 0.0e+00 1447.6 1266 66.2
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 0.0e+00 1312.7 862 79.2
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 4.7e-265 918.7 1324 46.5
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 1.1e-248 864.4 1319 46.2
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 1.2e-247 860.9 1333 46.1
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 6.4e-246 855.1 1300 46.4
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 5.3e-240 835.5 1320 45.5
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 2.6e-239 833.2 1313 45.5
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 1.5e-234 817.4 1332 44.1
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 1.8e-232 810.4 1314 44.4
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 1.5e-231 807.4 1397 42.8
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.4e-229 800.8 1313 44.8
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 5.5e-229 798.9 1285 45.5
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 9.4e-229 798.1 1357 43.6
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 2.2e-201 707.2 1362 41.6
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 9.8e-194 681.8 1363 40.9
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 3.5e-159 567.0 740 49.6
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 2.5e-157 560.8 385 80.5
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 1.6e-90 339.0 1314 30.0
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 3.5e-82 311.2 1337 29.2
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 2.0e-74 285.4 1174 27.3
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 1.0e-70 273.1 1295 26.9
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 5.9e-66 257.3 1316 25.1
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 6.6e-65 253.8 332 48.5
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 8.6e-65 253.4 1302 27.4
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 7.5e-61 240.4 734 31.5
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 1.7e-60 239.2 1293 24.4
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 3.7e-60 238.0 1311 27.4
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.4e-59 236.1 1292 25.7
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 2.3e-57 228.8 1129 27.8
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 9.5e-56 223.4 1190 27.3
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.6e-55 221.5 1284 25.6
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.4e-54 219.5 1287 25.0
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 8.9e-54 216.9 1128 27.0
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 2.0e-53 215.7 1284 25.6
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 1.1e-51 209.9 1117 27.8
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 3.2e-51 208.4 1326 25.0
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 1.7e-49 202.6 1029 27.0
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 3.0e-49 201.8 1330 26.2
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 4.3e-48 198.0 1321 25.1
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 4.6e-42 177.9 599 29.9
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 7.8e-42 177.2 720 29.9
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 1.2e-39 169.9 973 27.3
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 5.2e-38 164.5 796 27.3
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 3.8e-36 158.3 841 25.9
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 1.4e-35 156.4 776 25.3
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 2.3e-33 149.1 818 24.8
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 3.0e-33 148.7 861 25.0
Psat5g180120 Pisum sativum HOM05D006994 ORTHO05D008229 1.3e-31 143.3 208 45.2
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.1e-30 140.2 1248 24.2
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.5e-29 136.3 1286 25.0
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 1.3e-28 133.3 1055 25.9
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 1.7e-28 132.9 186 45.2
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 3.9e-25 121.7 403 29.5
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 9.6e-24 117.1 712 26.8
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 3.6e-23 115.2 944 23.0
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 1.5e-21 109.8 1013 23.1
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 2.2e-20 105.9 393 28.0
TPR.G2256 Trifolium pratense HOM05D006994 ORTHO05D008229 1.1e-19 103.6 395 29.1
Medtr3g452530 Medicago truncatula HOM05D006994 ORTHO05D008229 1.4e-19 103.2 376 30.6
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 7.9e-18 97.4 160 40.6
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 2.3e-17 95.9 172 37.8
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 6.7e-17 94.4 176 37.5
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 6.7e-17 94.4 1177 22.9
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 5.6e-16 91.3 245 33.5
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 5.6e-16 91.3 749 24.4
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 1.3e-15 90.1 196 34.2
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 2.8e-15 89.0 931 24.4
Lalb_Chr17g0348351 Lupinus albus HOM05D006994 ORTHO05D008229 4.8e-15 88.2 186 35.5
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 6.9e-14 84.3 211 32.7
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 1.5e-13 83.2 164 39.0
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 1.0e-12 80.5 170 35.9
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 2.2e-12 79.3 953 22.7
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 1.1e-11 77.0 180 32.2
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 1.4e-11 76.6 145 33.8
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 5.5e-11 74.7 209 30.6
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 1.2e-10 73.6 217 30.4
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 1.6e-10 73.2 293 26.3
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 1.8e-09 69.7 297 24.9
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 6.7e-09 67.8 896 21.4
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 8.7e-09 67.4 177 36.7
SEGI_04996 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.9e-08 66.2 109 39.4
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 1.6e-07 63.2 53 52.8
SEGI_14105 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.6e-07 63.2 395 25.6
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 8.2e-07 60.8 52 51.9
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 3.1e-06 58.9 351 23.4
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 4.1e-06 58.5 60 46.7
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 4.1e-06 58.5 62 43.5
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 6.9e-06 57.8 52 48.1


User provided reference genes

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