Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 3.3e-130 468.4 235 100.0
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 2.4e-109 399.1 241 85.1
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.3e-107 393.3 237 85.7
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 5.4e-101 371.3 241 82.6
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 9.0e-88 327.4 242 73.1
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 4.2e-85 318.5 236 70.3
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 5.5e-85 318.2 246 70.7
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.0e-83 313.9 236 68.2
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 8.7e-83 310.8 239 68.6
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 8.7e-83 310.8 232 68.1
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.6e-81 306.6 236 69.1
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.8e-80 303.1 236 66.9
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 5.3e-80 301.6 209 72.7
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 9.0e-80 300.8 236 66.5
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 7.6e-79 297.7 234 66.2
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 7.6e-79 297.7 235 64.7
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.1e-77 293.9 236 67.4
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 9.3e-77 290.8 237 62.9
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 9.3e-77 290.8 239 66.1
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.0e-75 287.3 254 60.2
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.3e-75 287.0 218 69.7
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 3.0e-75 285.8 196 73.0
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.5e-74 283.5 238 65.5
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 3.3e-74 282.3 238 65.1
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 9.6e-74 280.8 238 63.0
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.6e-73 280.0 199 72.4
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 3.7e-73 278.9 196 71.4
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 3.7e-73 278.9 238 61.3
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 6.3e-73 278.1 234 62.8
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 8.2e-73 277.7 234 62.0
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.4e-72 276.9 203 69.5
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.8e-72 276.6 209 69.4
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.8e-72 276.6 238 64.3
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.8e-72 276.6 238 64.3
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.8e-72 276.6 239 64.4
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 2.4e-72 276.2 241 63.9
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.1e-72 275.8 200 69.5
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 5.3e-72 275.0 237 63.7
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.2e-71 273.9 203 68.5
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 2.0e-71 273.1 248 63.7
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 2.0e-71 273.1 286 54.9
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.0e-71 273.1 235 63.0
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 2.6e-71 272.7 212 68.4
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.6e-71 272.7 203 68.5
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 3.4e-71 272.3 241 64.7
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 4.5e-71 271.9 245 59.6
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.8e-70 268.9 229 64.6
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 8.4e-70 267.7 202 69.8
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.1e-69 267.3 242 60.7
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.1e-69 267.3 220 64.5
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.9e-69 266.5 235 61.7
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.5e-69 266.2 235 61.3
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.6e-68 263.5 239 61.5
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 2.7e-68 262.7 259 56.4
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 4.6e-68 261.9 184 72.8
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.0e-67 259.2 240 60.0
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.1e-66 257.3 238 60.1
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.5e-66 256.1 264 54.9
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 5.7e-66 255.0 250 56.4
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 5.7e-66 255.0 250 56.4
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 9.7e-66 254.2 213 61.5
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.3e-65 253.8 204 66.7
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 2.2e-65 253.1 242 59.5
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.8e-65 252.7 237 59.5
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.8e-65 252.7 236 59.3
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 4.8e-65 251.9 222 61.7
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 8.2e-65 251.1 211 64.0
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 8.2e-65 251.1 199 61.8
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 8.2e-65 251.1 168 75.0
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.1e-64 250.8 192 66.7
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.1e-64 250.8 134 97.8
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.1e-64 250.8 247 60.3
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 1.8e-64 250.0 222 61.3
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.4e-64 249.6 205 65.9
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.2e-63 247.3 222 60.8
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.4e-63 245.7 239 58.6
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 7.7e-63 244.6 239 58.2
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 7.7e-63 244.6 238 58.4
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.3e-62 243.8 198 68.7
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.7e-62 243.4 238 58.8
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.2e-62 243.0 236 59.3
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.2e-62 243.0 215 64.2
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 2.9e-62 242.7 168 73.8
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 2.9e-62 242.7 222 58.6
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.4e-61 240.4 265 53.2
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.5e-61 239.6 239 56.1
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 4.2e-61 238.8 199 62.8
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 5.5e-61 238.4 202 64.4
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.2e-60 237.3 269 50.9
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.6e-60 236.9 205 62.9
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 2.1e-60 236.5 241 56.8
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.1e-58 230.7 250 52.8
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 2.0e-58 229.9 241 56.8
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 3.3e-58 229.2 240 55.8
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.3e-58 228.8 199 57.8
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 4.3e-58 228.8 199 60.8
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 7.4e-58 228.0 243 54.3
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.7e-57 226.9 217 59.0
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.1e-56 224.2 216 57.4
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 9.1e-56 221.1 195 61.0
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 3.4e-55 219.2 196 60.7
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 3.4e-55 219.2 183 60.7
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 3.4e-55 219.2 183 60.7
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 3.4e-55 219.2 169 69.8
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 7.7e-55 218.0 222 57.2
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 2.9e-54 216.1 250 51.6
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 2.9e-54 216.1 250 51.6
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 3.8e-54 215.7 250 51.6
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 8.5e-54 214.5 250 51.2
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 8.5e-54 214.5 248 51.6
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 8.5e-54 214.5 200 59.5
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.9e-53 213.4 219 55.7
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 1.9e-53 213.4 235 53.2
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 2.5e-53 213.0 191 57.1
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 3.2e-53 212.6 248 52.0
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.2e-52 210.7 165 68.5
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 1.6e-52 210.3 218 55.0
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 2.7e-52 209.5 197 55.8
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 2.7e-52 209.5 240 52.5
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 7.9e-52 208.0 249 49.8
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-51 207.2 254 50.8
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.1e-50 204.1 191 59.2
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 7.4e-50 201.4 208 54.8
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.1e-48 197.6 173 58.4
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 7.0e-48 194.9 246 48.8
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 2.0e-47 193.4 165 61.2
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 7.7e-47 191.4 199 55.3
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.1e-45 187.6 144 64.6
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 7.2e-45 184.9 191 56.0
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.6e-44 182.6 168 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 6.7e-43 178.3 144 59.0
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 2.0e-42 176.8 193 52.8
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.8e-41 172.9 189 50.3
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 8.2e-41 171.4 192 54.2
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 5.3e-40 168.7 203 51.2
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 8.5e-38 161.4 115 64.3
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.5e-37 160.6 167 55.1
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 3.2e-37 159.5 130 70.8
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.2e-34 151.0 130 68.5
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 4.8e-33 145.6 137 62.8
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.4e-32 144.1 152 53.3
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 5.4e-32 142.1 130 67.7
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.6e-31 140.6 121 71.1
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 2.0e-31 140.2 164 47.0
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.5e-31 139.4 118 58.5
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 2.9e-30 136.3 109 58.7
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 9.5e-29 131.3 104 63.5
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.2e-28 131.0 153 54.2
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 2.7e-28 129.8 148 55.4
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 6.3e-25 118.6 128 60.2
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 1.4e-24 117.5 250 37.6
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.9e-21 107.1 114 54.4
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 2.5e-21 106.7 189 36.5
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 3.3e-21 106.3 67 68.7
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 1.0e-19 101.3 89 53.9
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.8e-19 100.5 231 36.4
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 3.0e-19 99.8 104 52.9
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 6.8e-19 98.6 132 53.8
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 2.0e-18 97.1 123 41.5
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 3.4e-18 96.3 136 46.3
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 9.2e-16 88.2 91 60.4
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 2.3e-14 83.6 111 41.4
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 1.5e-13 80.9 97 53.6
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 1.6e-12 77.4 69 59.4
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 4.7e-12 75.9 56 57.1
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 2.0e-10 70.5 80 47.5
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 5.8e-10 68.9 71 54.9
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.3e-09 67.8 72 50.0
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.7e-09 66.2 67 49.3
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 8.3e-09 65.1 91 42.9
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 1.9e-08 63.9 91 41.8
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.6e-07 60.8 50 50.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 1.0e-06 58.2 76 35.5


User provided reference genes

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