Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G022900 Phaseolus vulgaris HOM05D009224 ORTHO05D010030 1.3e-35 152.5 75 100.0
Glyma.18G110300 Glycine max HOM05D009224 ORTHO05D010030 6.7e-29 130.2 75 86.7
Glyma.08G307500 Glycine max HOM05D009224 ORTHO05D010030 1.5e-28 129.0 76 86.8
Glyma.14G030300 Glycine max HOM05D009224 ORTHO05D010030 7.0e-18 93.6 73 65.8
Medtr5g091070 Medicago truncatula HOM05D009224 ORTHO05D010030 4.5e-17 90.9 67 64.2
Phvul.008G194200 Phaseolus vulgaris HOM05D009224 ORTHO05D010030 1.3e-16 89.4 75 60.0
LjContig00049g0025757 Lotus japonicus HOM05D009224 ORTHO05D010030 3.2e-15 84.7 72 62.5
LjContig00049g0020749 Lotus japonicus HOM05D009224 ORTHO05D010030 1.6e-14 82.4 70 60.0
Medtr5g091090 Medicago truncatula HOM05D009224 ORTHO05D010030 2.1e-14 82.0 71 60.6
TPR.G10162 Trifolium pratense HOM05D009224 ORTHO05D010030 2.7e-14 81.6 71 53.5
Atru.chr6.2048 Acer truncatum HOM05D009224 ORTHO05D010030 5.7e-12 73.9 73 56.2
QL08p044970 Quercus lobata HOM05D009224 ORTHO05D010030 9.7e-12 73.2 74 54.1
Prupe.3G177500 Prunus persica HOM05D009224 ORTHO05D010030 2.4e-10 68.6 75 46.7
Sopen07g023620 Solanum pennellii HOM05D009224 ORTHO05D010030 9.1e-10 66.6 68 48.5
PGSC0003DMG400035516 Solanum tuberosum HOM05D009224 ORTHO05D010030 1.2e-09 66.2 69 47.8
Solyc07g045060.1 Solanum lycopersicum HOM05D009224 ORTHO05D010030 1.6e-09 65.9 69 46.4
Cpa.g.sc50.109 Carica papaya HOM05D009224 ORTHO05D010030 4.5e-09 64.3 70 54.3
AUR62007732 Chenopodium quinoa HOM05D000204 ORTHO05D010030 4.5e-09 64.3 70 45.7
AUR62007733 Chenopodium quinoa HOM05D000204 ORTHO05D010030 4.5e-09 64.3 70 45.7
AUR62044771 Chenopodium quinoa HOM05D000204 ORTHO05D010030 4.5e-09 64.3 70 45.7
EL10Ac1g00768 Beta vulgaris HOM05D000204 ORTHO05D010030 5.9e-09 63.9 67 47.8
AUR62013407 Chenopodium quinoa HOM05D000204 ORTHO05D010030 7.7e-09 63.5 70 42.9
AUR62013408 Chenopodium quinoa HOM05D000204 ORTHO05D010030 1.0e-08 63.2 70 44.3
AUR62023415 Chenopodium quinoa HOM05D000204 ORTHO05D010030 1.0e-08 63.2 70 42.9
Ciclev10033945m.g Citrus clementina HOM05D009224 ORTHO05D010030 1.0e-08 63.2 70 47.1
CAN.G1500.7 Capsicum annuum HOM05D009224 ORTHO05D010030 1.3e-08 62.8 68 45.6
AUR62007731 Chenopodium quinoa HOM05D000204 ORTHO05D010030 1.3e-08 62.8 70 42.9
Ciclev10033958m.g Citrus clementina HOM05D009224 ORTHO05D010030 1.3e-08 62.8 73 46.6
AUR62013738 Chenopodium quinoa HOM05D000204 ORTHO05D010030 2.2e-08 62.0 70 41.4
AUR62044610 Chenopodium quinoa HOM05D000204 ORTHO05D010030 2.2e-08 62.0 70 41.4
AUR62023414 Chenopodium quinoa HOM05D000204 ORTHO05D010030 2.9e-08 61.6 70 42.9
AUR62044611 Chenopodium quinoa HOM05D000204 ORTHO05D010030 2.9e-08 61.6 75 40.0
FAN09G1964 Fragaria x ananassa HOM05D009224 ORTHO05D010030 3.8e-08 61.2 72 50.0
AUR62013736 Chenopodium quinoa HOM05D000204 ORTHO05D010030 5.0e-08 60.8 67 46.3
FAN05G5798 Fragaria x ananassa HOM05D009224 ORTHO05D010030 6.5e-08 60.5 67 53.7
FAN14G1761 Fragaria x ananassa HOM05D009224 ORTHO05D010030 6.5e-08 60.5 67 53.7
Eucgr.K01226 Eucalyptus grandis HOM05D009224 ORTHO05D010030 8.5e-08 60.1 72 44.4
Sabra02G0046900 Salix brachista HOM05D009224 ORTHO05D010030 8.5e-08 60.1 69 53.6
Sc25g0004430 Simmondsia chinensis HOM05D000204 ORTHO05D010030 8.5e-08 60.1 69 40.6
FvH4_6g38650 Fragaria vesca HOM05D009224 ORTHO05D010030 1.1e-07 59.7 67 53.7
AUR62023417 Chenopodium quinoa HOM05D000204 ORTHO05D010030 1.5e-07 59.3 67 41.8
DCAR_023046 Daucus carota HOM05D009224 ORTHO05D010030 1.9e-07 58.9 67 44.8
Ah.08g223380 Amaranthus hybridus HOM05D000204 ORTHO05D010030 2.5e-07 58.5 70 41.4
AUR62013739 Chenopodium quinoa HOM05D000204 ORTHO05D010030 2.5e-07 58.5 67 37.3
AUR62023413 Chenopodium quinoa HOM05D000204 ORTHO05D010030 3.2e-07 58.2 67 37.3
Gohir.D06G146100 Gossypium hirsutum HOM05D000204 ORTHO05D010030 4.2e-07 57.8 72 43.1
Gorai.010G170300 Gossypium raimondii HOM05D000204 ORTHO05D010030 4.2e-07 57.8 72 43.1
Duzib235G0272 Durio zibethinus HOM05D008180 ORTHO05D010030 5.5e-07 57.4 67 41.8
MBI02_g30403_MAGBIO Magnolia biondii HOM05D000204 ORTHO05D002882 5.5e-07 57.4 74 40.5
FAN02G4494 Fragaria x ananassa HOM05D009224 ORTHO05D010030 7.2e-07 57.0 67 52.2
Thecc.06G134100 Theobroma cacao HOM05D008180 ORTHO05D010030 1.6e-06 55.8 67 46.3
Peaxi162Scf00359g00079 Petunia axillaris HOM05D009224 ORTHO05D010030 2.1e-06 55.5 54 50.0
GSVIVG01020838001 Vitis vinifera HOM05D009224 ORTHO05D010030 2.1e-06 55.5 69 46.4
Sed0003993 Sechium edule HOM05D000204 ORTHO05D002882 3.6e-06 54.7 73 39.7
ATR0763G061 Amborella trichopoda HOM05D000204 ORTHO05D002882 4.7e-06 54.3 72 43.1
ATR0763G148 Amborella trichopoda HOM05D000204 ORTHO05D010030 4.7e-06 54.3 73 39.7
SGA_v2.0_scaffold7G03602 Striga asiatica HOM05D000204 ORTHO05D002882 6.1e-06 53.9 71 42.3
Sc13g0004250 Simmondsia chinensis HOM05D000204 ORTHO05D010030 8.0e-06 53.5 70 40.0


User provided reference genes

Program Settings