Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 3.3e-20 102.1 126 100.0
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 3.9e-13 78.6 126 87.3
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 4.3e-12 75.1 124 88.7
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 4.3e-12 75.1 124 88.7
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 7.4e-12 74.3 122 89.3
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 7.4e-12 74.3 126 87.3
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 2.4e-10 69.3 39 79.5
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 2.4e-10 69.3 126 85.7
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 3.1e-10 68.9 41 80.5
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 4.0e-10 68.6 41 78.0
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 6.9e-10 67.8 41 75.6
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 6.9e-10 67.8 41 73.2
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 9.0e-10 67.4 41 75.6
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 9.0e-10 67.4 121 82.6
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 9.0e-10 67.4 41 75.6
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 1.2e-09 67.0 121 88.4
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 1.2e-09 67.0 41 75.6
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.2e-09 67.0 39 82.1
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 2.0e-09 66.2 40 77.5
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 2.6e-09 65.9 41 73.2
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 2.6e-09 65.9 40 75.0
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 2.6e-09 65.9 41 73.2
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 3.4e-09 65.5 41 73.2
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 4.5e-09 65.1 41 75.6
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 4.5e-09 65.1 41 75.6
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 4.5e-09 65.1 41 75.6
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 4.5e-09 65.1 41 75.6
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 4.5e-09 65.1 41 75.6
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 5.8e-09 64.7 41 73.2
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 5.8e-09 64.7 41 73.2
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 5.8e-09 64.7 41 73.2
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 5.8e-09 64.7 41 68.3
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 5.8e-09 64.7 40 75.0
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 5.8e-09 64.7 39 76.9
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 5.8e-09 64.7 39 76.9
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 7.6e-09 64.3 41 70.7
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 7.6e-09 64.3 41 73.2
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 7.6e-09 64.3 41 73.2
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 7.6e-09 64.3 41 68.3
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 7.6e-09 64.3 41 68.3
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 7.6e-09 64.3 41 73.2
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 9.9e-09 63.9 39 74.4
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 9.9e-09 63.9 39 74.4
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 9.9e-09 63.9 39 74.4
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 9.9e-09 63.9 39 76.9
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 1.3e-08 63.5 41 70.7
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 1.3e-08 63.5 40 70.0
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 1.7e-08 63.2 41 70.7
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 1.7e-08 63.2 41 73.2
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 1.7e-08 63.2 41 73.2
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 1.7e-08 63.2 41 73.2
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 2.2e-08 62.8 39 71.8
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 2.2e-08 62.8 41 70.7
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 2.2e-08 62.8 41 70.7
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 2.9e-08 62.4 39 66.7
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 2.9e-08 62.4 41 73.2
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 3.8e-08 62.0 41 70.7
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 4.9e-08 61.6 41 68.3
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 4.9e-08 61.6 41 68.3
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 4.9e-08 61.6 37 75.7
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 6.4e-08 61.2 38 71.1
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 6.4e-08 61.2 40 70.0
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 8.4e-08 60.8 121 86.0
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 1.1e-07 60.5 40 70.0
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 1.4e-07 60.1 39 64.1
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 1.9e-07 59.7 41 70.7
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 3.2e-07 58.9 41 61.0
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 4.2e-07 58.5 37 70.3
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 4.2e-07 58.5 41 63.4
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 5.5e-07 58.2 41 65.9
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 5.5e-07 58.2 39 64.1
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 5.5e-07 58.2 38 71.1
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 9.3e-07 57.4 39 69.2
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 1.2e-06 57.0 36 66.7
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 1.6e-06 56.6 39 64.1
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 2.7e-06 55.8 41 70.7
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 3.5e-06 55.5 36 69.4
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 3.5e-06 55.5 31 80.6
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 3.5e-06 55.5 34 73.5


User provided reference genes

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