Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 3.2e-56 221.5 108 100.0
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 4.0e-51 204.5 108 91.7
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 9.3e-40 166.8 110 77.3
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 5.7e-37 157.5 107 68.2
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.3e-36 156.4 108 73.1
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 2.8e-36 155.2 108 72.2
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 6.3e-36 154.1 109 70.6
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 6.3e-36 154.1 109 70.6
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.8e-35 152.5 109 72.5
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.8e-35 152.5 109 70.6
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 6.9e-35 150.6 112 68.8
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 9.0e-35 150.2 109 68.8
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 1.0e-33 146.7 108 67.6
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.3e-33 146.4 110 66.4
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 2.2e-33 145.6 110 65.5
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.1e-32 143.3 115 67.0
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 5.5e-32 141.0 111 62.2
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 5.5e-32 141.0 96 72.9
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 9.3e-32 140.2 108 68.5
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 2.7e-31 138.7 113 68.1
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 6.1e-31 137.5 108 60.2
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.3e-30 135.6 108 56.5
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 6.7e-30 134.0 110 60.0
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.8e-28 128.6 96 62.5
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 3.7e-28 128.3 112 57.1
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 6.3e-28 127.5 111 57.7
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 8.2e-28 127.1 108 59.3
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.1e-27 126.7 112 55.4
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 1.1e-27 126.7 93 67.7
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.4e-27 126.3 108 55.6
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.4e-27 126.3 108 56.5
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.4e-27 125.6 110 56.4
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 2.4e-27 125.6 115 55.7
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.5e-26 122.9 109 56.9
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 2.0e-26 122.5 106 56.6
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.6e-26 122.1 111 58.6
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.6e-26 122.1 111 58.6
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.6e-26 122.1 111 58.6
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 4.5e-26 121.3 111 58.6
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 4.5e-26 121.3 111 58.6
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.7e-25 119.4 111 53.2
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 2.2e-25 119.0 122 52.5
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 2.2e-25 119.0 105 54.3
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.9e-25 118.6 109 55.0
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 8.5e-25 117.1 109 54.1
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.5e-25 117.1 110 55.5
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.4e-24 116.3 115 53.9
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.4e-24 116.3 115 53.9
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.5e-24 115.5 110 55.5
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 5.5e-24 114.4 112 54.5
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 5.5e-24 114.4 111 52.3
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 2.1e-23 112.5 108 51.9
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 2.7e-23 112.1 100 58.0
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.7e-23 112.1 109 52.3
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 4.7e-23 111.3 110 50.9
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 6.1e-23 110.9 108 49.1
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 7.9e-23 110.5 109 52.3
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.0e-22 110.2 92 57.6
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-22 109.8 108 50.9
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.4e-22 109.8 91 57.1
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.0e-22 108.6 93 57.0
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 3.9e-22 108.2 110 50.0
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 5.1e-22 107.8 109 54.1
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.1e-21 106.7 109 51.4
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.5e-21 106.3 114 55.3
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.5e-21 106.3 114 55.3
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.5e-21 106.3 114 52.6
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.4e-21 104.8 110 52.7
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.7e-21 104.4 110 52.7
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.7e-21 104.4 110 51.8
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 7.4e-21 104.0 108 53.7
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.7e-21 103.6 110 51.8
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.3e-20 103.2 108 48.1
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.3e-20 103.2 111 48.6
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 1.3e-20 103.2 114 52.6
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.7e-20 102.8 119 50.4
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.7e-20 101.7 111 51.4
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 6.3e-20 100.9 78 62.8
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 6.3e-20 100.9 114 51.8
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 8.2e-20 100.5 97 57.7
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.1e-19 100.1 101 50.5
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.4e-19 99.8 112 50.9
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.4e-19 99.8 109 48.6
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.4e-19 99.8 110 47.3
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.8e-19 99.4 94 55.3
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.1e-19 98.6 106 47.2
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 4.1e-19 98.2 97 48.5
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 5.3e-19 97.8 108 45.4
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 2.0e-18 95.9 109 49.5
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.4e-18 95.1 112 44.6
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 7.7e-18 94.0 100 52.0
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.3e-17 93.2 125 44.8
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.7e-17 92.8 98 52.0
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.9e-17 92.0 108 43.5
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 3.8e-17 91.7 95 54.7
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.2e-16 88.6 108 45.4
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.2e-16 88.2 116 44.8
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.5e-16 87.8 116 44.8
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 7.2e-16 87.4 109 45.0
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 9.4e-16 87.0 108 41.7
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 9.4e-16 87.0 108 41.7
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 9.4e-16 87.0 109 45.9
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.6e-15 86.3 93 45.2
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.6e-15 86.3 93 48.4
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 2.1e-15 85.9 108 38.9
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.7e-15 85.5 96 44.8
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.7e-15 85.5 108 40.7
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.6e-15 85.1 93 44.1
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 4.7e-15 84.7 108 40.7
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 4.7e-15 84.7 125 44.0
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 4.7e-15 84.7 80 47.5
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 8.0e-15 84.0 90 50.0
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.4e-14 83.2 108 38.9
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.8e-14 82.8 108 42.6
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.8e-14 82.8 117 41.0
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 2.3e-14 82.4 116 43.1
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.0e-14 82.0 101 49.5
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.9e-14 81.6 108 40.7
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 3.9e-14 81.6 108 41.7
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 3.9e-14 81.6 108 41.7
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 3.9e-14 81.6 108 41.7
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 5.2e-14 81.3 109 42.2
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.6e-13 79.0 108 41.7
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 5.7e-13 77.8 108 39.8
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 5.7e-13 77.8 108 39.8
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 7.4e-13 77.4 108 39.8
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 9.7e-13 77.0 108 38.9
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 9.7e-13 77.0 105 43.8
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.7e-12 76.3 112 40.2
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 2.8e-12 75.5 61 57.4
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.7e-12 75.1 112 41.1
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 3.7e-12 75.1 107 38.3
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 6.3e-12 74.3 101 35.6
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 8.2e-12 73.9 108 38.9
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.1e-11 73.6 94 43.6
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.1e-11 73.6 112 39.3
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 1.8e-11 72.8 97 42.3
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 4.1e-11 71.6 110 39.1
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 7.0e-11 70.9 119 41.2
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 7.0e-11 70.9 53 50.9
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 9.1e-11 70.5 96 35.4
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.6e-10 68.9 99 39.4
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.9e-09 65.5 95 37.9
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.9e-08 62.8 112 36.6
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 7.2e-08 60.8 110 38.2
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 9.4e-08 60.5 48 62.5
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 2.1e-07 59.3 94 39.4
MBI19_g06152_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 1.8e-06 56.2 108 36.1


User provided reference genes

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