Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 7.8e-98 360.5 191 100.0
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 4.4e-93 344.7 175 98.3
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 3.3e-88 328.6 187 86.1
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 4.0e-86 321.6 188 83.0
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 6.4e-84 314.3 191 81.7
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 8.4e-84 313.9 191 80.1
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 7.1e-83 310.8 191 79.6
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 6.6e-81 304.3 193 79.8
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 8.6e-81 303.9 165 87.3
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 6.9e-78 294.3 193 77.7
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 2.6e-77 292.4 191 78.5
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 2.9e-76 288.9 173 82.7
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 6.4e-76 287.7 193 75.6
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 2.5e-72 275.8 187 71.7
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 5.6e-72 274.6 183 71.0
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 5.6e-72 274.6 188 73.4
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 2.1e-71 272.7 187 70.6
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 6.2e-71 271.2 174 75.9
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.1e-70 270.4 187 70.6
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.4e-70 270.0 181 72.9
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 3.1e-70 268.9 186 70.4
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 5.3e-70 268.1 181 72.4
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 1.2e-69 266.9 172 75.6
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 3.4e-69 265.4 189 70.9
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 3.4e-69 265.4 181 71.8
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 4.5e-69 265.0 174 74.7
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 5.8e-69 264.6 163 77.3
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 2.9e-68 262.3 181 70.2
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 2.9e-68 262.3 181 70.2
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 2.9e-68 262.3 172 77.9
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 3.8e-68 261.9 168 73.2
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 3.8e-68 261.9 195 69.7
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 6.4e-68 261.2 179 70.4
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 1.1e-67 260.4 174 74.1
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 1.4e-67 260.0 186 68.8
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.4e-67 260.0 184 69.0
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.9e-67 259.6 175 72.0
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.9e-67 259.6 174 73.0
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 3.2e-67 258.8 168 72.6
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 3.2e-67 258.8 174 73.0
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 7.1e-67 257.7 187 68.4
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 7.1e-67 257.7 189 66.7
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 7.1e-67 257.7 171 71.3
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 7.1e-67 257.7 171 71.3
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 1.2e-66 256.9 163 76.1
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 1.6e-66 256.5 173 70.5
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 2.7e-66 255.8 169 71.6
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 3.5e-66 255.4 169 74.0
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.5e-66 255.4 171 71.3
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 4.6e-66 255.0 171 71.9
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 4.6e-66 255.0 169 72.2
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 6.0e-66 254.6 184 68.5
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 6.0e-66 254.6 175 71.4
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 1.0e-65 253.8 173 71.7
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 1.3e-65 253.4 186 67.7
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.8e-65 253.1 174 70.1
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 3.0e-65 252.3 168 71.4
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.9e-65 251.9 172 69.8
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 3.9e-65 251.9 183 67.8
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 3.9e-65 251.9 190 66.3
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 6.7e-65 251.1 174 69.5
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.1e-64 250.4 184 67.4
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 1.1e-64 250.4 184 67.4
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.1e-64 250.4 170 72.9
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.5e-64 250.0 170 70.6
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 1.9e-64 249.6 173 71.1
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 1.9e-64 249.6 181 66.3
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.9e-64 249.6 178 69.7
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 2.5e-64 249.2 170 70.6
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 3.3e-64 248.8 173 68.2
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 3.3e-64 248.8 168 69.6
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 4.3e-64 248.4 184 66.8
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 5.6e-64 248.1 189 63.0
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 7.4e-64 247.7 169 69.8
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 7.4e-64 247.7 183 66.7
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 7.4e-64 247.7 183 65.6
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 7.4e-64 247.7 176 69.9
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 7.4e-64 247.7 169 69.8
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 9.6e-64 247.3 170 70.0
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 2.1e-63 246.1 189 62.4
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 2.1e-63 246.1 175 66.9
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 2.1e-63 246.1 185 65.9
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 2.8e-63 245.7 181 65.2
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 2.8e-63 245.7 181 65.2
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 2.8e-63 245.7 189 62.4
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 3.6e-63 245.4 181 68.0
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 4.8e-63 245.0 176 69.9
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 6.2e-63 244.6 184 65.2
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 6.2e-63 244.6 174 66.7
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 6.2e-63 244.6 174 66.7
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 6.2e-63 244.6 174 66.7
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 1.1e-62 243.8 179 65.4
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.4e-62 243.4 187 65.2
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 4.0e-62 241.9 168 67.9
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 4.0e-62 241.9 169 68.6
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 2.0e-61 239.6 188 61.7
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 2.6e-61 239.2 172 71.5
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 4.5e-61 238.4 172 70.9
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 4.6e-58 228.4 163 68.1
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.8e-57 226.5 187 61.0
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 5.1e-57 224.9 186 61.3
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 3.4e-53 212.2 187 57.8
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 2.9e-52 209.1 123 78.0
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 1.4e-51 206.8 165 63.6
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 3.2e-51 205.7 172 60.5
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 4.2e-51 205.3 181 58.6
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 2.5e-48 196.1 182 56.0
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 4.3e-48 195.3 151 61.6
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 2.8e-47 192.6 148 64.9
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 4.8e-47 191.8 169 58.0
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 9.0e-46 187.6 166 58.4
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.2e-45 187.2 120 74.2
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.5e-45 186.8 119 73.9
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 7.6e-45 184.5 148 62.2
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 6.5e-44 181.4 187 53.5
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 7.2e-43 177.9 128 68.8
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 4.6e-42 175.3 148 59.5
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 7.9e-42 174.5 140 60.7
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 8.2e-39 164.5 110 70.9
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 3.2e-35 152.5 130 53.1
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 3.6e-34 149.1 171 48.0
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 1.5e-32 143.7 84 82.1
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 3.3e-32 142.5 91 72.5
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 9.7e-32 141.0 150 49.3
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 1.7e-31 140.2 118 58.5
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 4.2e-27 125.6 181 43.1
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 4.2e-27 125.6 181 43.1
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 6.1e-26 121.7 189 39.2
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 3.0e-25 119.4 153 42.5
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 8.5e-20 101.3 57 82.5
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 1.5e-19 100.5 76 63.2
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 4.7e-18 95.5 110 41.8
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 1.5e-16 90.5 60 71.7
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 3.3e-16 89.4 153 35.3
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 3.3e-16 89.4 153 35.3
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 8.0e-10 68.2 55 58.2


User provided reference genes

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