Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 0.0e+00 1157.1 561 100.0
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 0.0e+00 1124.8 561 97.0
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 3.2e-277 958.0 556 83.6
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 3.4e-258 894.8 564 77.0
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 5.7e-258 894.0 564 77.1
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 3.2e-256 888.3 558 78.3
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 2.0e-250 869.0 560 77.0
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 1.6e-244 849.4 560 73.2
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 3.3e-237 825.1 564 70.4
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 9.5e-237 823.5 520 76.5
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 3.5e-231 805.1 567 69.0
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 1.3e-230 803.1 565 67.8
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 3.3e-229 798.5 564 67.7
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 4.3e-229 798.1 560 68.0
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 7.3e-229 797.3 566 68.0
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 9.6e-229 797.0 565 67.4
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 9.6e-229 797.0 563 67.9
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 2.1e-228 795.8 565 68.0
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 3.6e-228 795.0 564 67.6
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 1.1e-227 793.5 563 67.7
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 3.1e-227 792.0 560 67.5
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 1.2e-226 790.0 560 67.3
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.0e-226 789.3 561 67.2
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 2.0e-226 789.3 560 67.1
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 4.4e-226 788.1 565 68.5
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.4e-226 788.1 561 66.8
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 5.8e-226 787.7 561 66.5
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 3.2e-224 781.9 564 67.4
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 3.2e-224 781.9 582 66.2
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 9.3e-224 780.4 562 67.1
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 2.7e-223 778.9 568 66.4
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 4.6e-223 778.1 559 67.6
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 7.8e-223 777.3 564 66.3
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 6.9e-219 764.2 522 71.1
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.5e-218 763.1 612 61.6
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 4.4e-218 761.5 535 68.2
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.1e-216 756.9 563 64.8
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 1.1e-216 756.9 566 66.4
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 4.6e-215 751.5 599 62.1
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 1.0e-214 750.4 559 65.5
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 3.0e-214 748.8 566 63.1
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 8.7e-214 747.3 560 63.4
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 3.3e-213 745.3 564 64.4
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 4.3e-213 745.0 559 63.9
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 5.6e-213 744.6 562 64.1
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 6.2e-212 741.1 570 63.0
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 2.6e-210 735.7 560 63.6
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 1.7e-209 733.0 559 63.0
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 1.4e-208 729.9 559 62.6
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 1.4e-208 729.9 561 63.3
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 4.2e-208 728.4 559 62.4
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 1.6e-207 726.5 560 62.3
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 4.6e-207 724.9 569 64.7
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 1.3e-206 723.4 570 61.6
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 1.8e-206 723.0 571 62.2
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 5.1e-206 721.5 559 62.1
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 1.6e-204 716.5 567 60.7
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 7.6e-202 707.6 560 61.4
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 3.2e-200 702.2 571 61.6
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 5.5e-200 701.4 525 66.7
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 1.3e-198 696.8 520 64.6
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 1.8e-198 696.4 563 59.3
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 1.5e-197 693.3 519 64.2
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 1.9e-197 693.0 560 60.5
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 2.5e-197 692.6 564 58.9
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.4e-195 686.8 561 61.3
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 3.1e-195 685.6 559 59.0
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 1.4e-192 676.8 590 59.0
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 2.1e-191 672.9 531 64.0
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 1.1e-189 667.2 562 58.9
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 1.4e-187 660.2 460 69.3
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 3.1e-187 659.1 502 62.9
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 9.0e-187 657.5 559 58.5
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 1.5e-186 656.8 525 61.0
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 4.5e-186 655.2 460 68.9
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 1.3e-185 653.7 532 60.5
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 3.8e-185 652.1 526 63.3
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 3.0e-182 642.5 457 67.4
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 2.2e-177 626.3 791 47.8
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 5.0e-177 625.2 491 64.8
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 3.6e-175 619.0 562 54.4
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 1.8e-171 606.7 400 74.8
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 6.5e-169 598.2 488 62.3
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 2.0e-165 586.6 682 47.8
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 1.1e-160 570.9 580 50.0
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 2.7e-159 566.2 571 51.0
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 1.4e-158 563.9 533 51.8
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 6.8e-158 561.6 592 51.0
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 3.6e-151 539.3 530 52.8
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.5e-149 533.9 530 53.0
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 1.8e-147 526.9 304 81.6
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 2.0e-141 506.9 478 55.0
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 1.2e-111 407.9 593 39.0
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 4.9e-108 396.0 309 62.1
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 6.4e-108 395.6 316 61.1
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 9.3e-107 391.7 268 72.8
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 6.0e-106 389.0 275 64.4
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 1.7e-105 387.5 595 35.6
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 3.8e-100 369.8 322 56.8
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 7.1e-99 365.5 337 54.0
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 1.9e-91 340.9 260 60.8
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 4.6e-90 336.3 208 76.4
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 3.1e-86 323.6 244 60.7
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 1.5e-80 304.7 261 59.4
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.3e-79 301.6 260 58.5
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 1.0e-76 292.0 261 57.9
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 8.2e-63 245.7 212 56.6
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 1.7e-60 238.0 186 65.6
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 2.4e-54 217.6 305 38.0
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 7.0e-54 216.1 162 65.4
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 8.5e-52 209.1 159 61.6
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 5.2e-49 199.9 137 65.7
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 4.8e-47 193.4 210 51.4
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 1.2e-42 178.7 171 56.7
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 2.7e-37 161.0 169 53.8
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.0e-36 159.1 142 55.6
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 3.1e-30 137.5 86 70.9
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 7.8e-29 132.9 104 58.7
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 9.8e-24 115.9 149 47.7
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 2.2e-15 88.2 113 42.5
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 2.0e-13 81.6 50 70.0
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 1.1e-11 75.9 80 51.2
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 3.3e-11 74.3 85 44.7
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 2.6e-08 64.7 41 65.9
Psat5g200440 Pisum sativum HOM05D000228 ORTHO05D001545 7.1e-06 56.6 64 46.9


User provided reference genes

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