Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 0.0e+00 1983.8 1024 100.0
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 0.0e+00 1575.5 1101 78.2
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 0.0e+00 1211.8 1181 61.5
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 2.0e-248 863.2 926 56.5
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.2e-213 747.7 1158 45.2
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.2e-213 747.7 1158 45.2
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 5.6e-211 738.8 1186 43.9
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 1.4e-206 724.2 1224 42.6
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 3.5e-197 693.0 897 50.8
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 7.9e-181 638.6 1493 36.2
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.8e-149 533.9 1121 38.8
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 2.6e-131 474.2 1393 31.3
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 8.1e-125 452.6 1403 31.5
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 1.4e-124 451.8 1359 31.1
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.3e-109 402.1 589 45.0
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 2.1e-104 384.8 1004 35.1
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 3.9e-103 380.6 1240 29.2
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 1.3e-101 375.6 1369 29.3
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 2.8e-101 374.4 1326 29.7
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 6.2e-101 373.2 1381 28.9
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.5e-99 368.6 1058 32.5
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 3.4e-99 367.5 1375 29.2
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 7.6e-99 366.3 1333 29.4
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 7.6e-99 366.3 1411 28.8
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 9.9e-99 365.9 1378 28.5
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 6.4e-98 363.2 1334 29.7
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.4e-97 361.3 1339 29.1
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 5.5e-97 360.1 1315 29.2
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 3.5e-96 357.5 1270 29.8
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 1.0e-95 355.9 1407 27.9
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.1e-94 352.4 1327 29.1
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 1.5e-94 352.1 1360 29.6
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 1.9e-94 351.7 1064 30.4
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 4.3e-94 350.5 1064 30.2
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 4.3e-94 350.5 1365 28.8
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 3.7e-93 347.4 1436 28.1
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 4.8e-93 347.1 1414 28.0
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.4e-92 344.7 1332 28.9
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 1.2e-91 342.4 1354 29.5
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 1.1e-89 335.9 1119 29.8
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 1.1e-89 335.9 1119 29.8
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 7.1e-89 333.2 1339 28.0
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 9.3e-89 332.8 1119 30.1
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 3.5e-88 330.9 1124 29.7
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 6.0e-88 330.1 1054 30.4
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 1.0e-87 329.3 1316 29.0
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 2.3e-87 328.2 1120 29.5
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 6.7e-87 326.6 1326 28.1
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 4.3e-86 323.9 1366 27.7
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 1.4e-84 318.9 1113 28.5
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 2.4e-84 318.2 1124 29.3
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 5.3e-84 317.0 1123 29.5
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 2.0e-83 315.1 1174 28.0
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.2e-80 305.8 1303 28.2
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 1.3e-77 295.8 275 65.1
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 4.8e-77 293.9 511 37.2
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 4.8e-77 293.9 1332 27.0
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 1.3e-74 285.8 1228 28.8
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 3.8e-74 284.3 1300 26.4
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 6.5e-74 283.5 421 41.3
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 1.2e-72 279.3 1336 26.6
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 4.6e-72 277.3 1388 26.7
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 4.6e-72 277.3 491 37.3
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 3.0e-71 274.6 1155 28.2
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 3.9e-71 274.2 1330 26.4
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 6.7e-71 273.5 470 37.7
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 2.2e-69 268.5 1233 26.4
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 3.7e-69 267.7 1251 28.2
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 3.1e-68 264.6 576 33.7
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 4.1e-68 264.2 1293 27.0
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 2.2e-66 258.5 524 35.5
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 1.6e-64 252.3 1120 27.1
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 4.7e-64 250.8 1261 26.7
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 2.3e-63 248.4 1327 25.8
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 3.1e-60 238.0 1324 26.9
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 6.5e-58 230.3 1302 25.0
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 8.5e-58 229.9 476 34.2
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 3.2e-57 228.0 1402 24.1
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 3.2e-57 228.0 342 39.8
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 4.2e-57 227.6 1313 26.0
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 2.1e-56 225.3 1361 24.9
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 2.7e-56 224.9 1337 25.7
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 4.0e-55 221.1 424 37.7
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 5.2e-55 220.7 1355 25.3
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 8.8e-55 219.9 1076 26.8
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 1.5e-54 219.2 1315 24.7
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 1.3e-53 216.1 623 31.5
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 6.3e-53 213.8 1294 24.9
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.8e-52 212.2 624 28.2
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 4.1e-52 211.1 1037 27.7
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 4.1e-52 211.1 440 34.1
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 4.5e-51 207.6 1243 26.1
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 1.0e-50 206.5 262 50.0
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.9e-50 204.9 468 36.8
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.1e-49 203.0 1109 26.1
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 1.2e-48 199.5 418 33.7
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 4.4e-46 191.0 264 42.4
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 5.9e-43 180.6 1327 24.1
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 7.7e-43 180.3 313 36.1
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 3.8e-42 177.9 1084 23.5
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 1.6e-40 172.6 1159 23.0
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 3.0e-39 168.3 397 32.7
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 8.8e-39 166.8 406 32.0
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.5e-38 166.0 320 39.4
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 7.0e-36 157.1 1292 24.3
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 3.5e-35 154.8 396 31.3
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 5.9e-35 154.1 310 35.2
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.0e-34 153.3 278 36.7
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.9e-34 151.8 269 36.4
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 3.3e-33 148.3 440 28.0
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 4.3e-33 147.9 1227 24.3
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 1.6e-32 146.0 733 24.7
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 1.0e-31 143.3 114 59.6
Glyma.07G011650 Glycine max HOM05D005171 ORTHO05D006343 9.2e-28 130.2 88 71.6
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 5.9e-27 127.5 238 40.8
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 3.5e-19 101.7 120 46.7
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 6.0e-19 100.9 124 45.2
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 2.5e-17 95.5 139 41.7
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 7.5e-14 84.0 120 35.8
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 1.3e-13 83.2 397 28.7
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 1.7e-13 82.8 106 40.6
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 4.9e-13 81.3 98 41.8
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 1.9e-12 79.3 127 42.5
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 1.9e-12 79.3 127 42.5
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 3.2e-12 78.6 355 28.2
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.3e-10 72.4 117 40.2
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 6.6e-10 70.9 120 39.2
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 2.5e-09 68.9 104 37.5
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 2.8e-08 65.5 155 36.8
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 6.8e-07 60.8 275 29.8


User provided reference genes

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