Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 7.0e-24 113.2 62 100.0
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 2.0e-15 85.1 67 73.1
VMungo0540G2222 Vigna mungo HOM05D002385 ORTHO05D002245 1.7e-14 82.0 51 80.4
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 3.6e-12 74.3 75 62.7
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.1e-11 71.2 56 71.4
Medtr3g081140 Medicago truncatula HOM05D002385 ORTHO05D002245 5.2e-11 70.5 66 74.2
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 6.8e-11 70.1 59 66.1
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 8.9e-11 69.7 62 71.0
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.2e-10 69.3 47 78.7
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.2e-10 69.3 71 63.4
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.0e-10 68.6 57 64.9
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.0e-10 68.6 57 64.9
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 2.6e-10 68.2 47 83.0
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 3.4e-10 67.8 52 69.2
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.4e-10 67.4 57 64.9
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 4.4e-10 67.4 52 73.1
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 4.4e-10 67.4 73 56.2
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 5.8e-10 67.0 58 63.8
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 5.8e-10 67.0 58 63.8
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 5.8e-10 67.0 52 69.2
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 5.8e-10 67.0 52 69.2
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 5.8e-10 67.0 58 63.8
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 7.5e-10 66.6 68 58.8
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 7.5e-10 66.6 60 65.0
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 7.5e-10 66.6 60 65.0
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.5e-10 66.6 61 62.3
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.5e-10 66.6 61 62.3
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 9.8e-10 66.2 57 61.4
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 1.3e-09 65.9 58 67.2
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 1.3e-09 65.9 47 78.7
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 1.3e-09 65.9 47 78.7
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 2.2e-09 65.1 53 75.5
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 2.9e-09 64.7 47 76.6
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 3.7e-09 64.3 55 67.3
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 3.7e-09 64.3 54 63.0
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.7e-09 64.3 54 63.0
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 3.7e-09 64.3 48 75.0
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 3.7e-09 64.3 52 69.2
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 3.7e-09 64.3 57 57.9
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 4.9e-09 63.9 58 60.3
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 4.9e-09 63.9 52 65.4
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 4.9e-09 63.9 59 64.4
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.9e-09 63.9 63 61.9
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 6.4e-09 63.5 51 72.5
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 6.4e-09 63.5 51 72.5
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 6.4e-09 63.5 52 67.3
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 6.4e-09 63.5 52 65.4
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 6.4e-09 63.5 54 68.5
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 6.4e-09 63.5 47 57.4
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 8.3e-09 63.2 73 57.5
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 8.3e-09 63.2 54 70.4
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 8.3e-09 63.2 54 68.5
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 8.3e-09 63.2 54 61.1
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 8.3e-09 63.2 58 51.7
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 8.3e-09 63.2 52 67.3
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 1.4e-08 62.4 52 57.7
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 1.4e-08 62.4 52 57.7
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 1.4e-08 62.4 64 56.2
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.4e-08 62.4 52 67.3
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 1.4e-08 62.4 48 75.0
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.9e-08 62.0 56 64.3
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.9e-08 62.0 47 72.3
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.9e-08 62.0 52 67.3
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 1.9e-08 62.0 79 51.9
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 2.4e-08 61.6 50 70.0
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 3.2e-08 61.2 53 66.0
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 3.2e-08 61.2 47 72.3
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 3.2e-08 61.2 48 72.9
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.2e-08 61.2 52 57.7
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.1e-08 60.8 48 56.2
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 5.4e-08 60.5 47 72.3
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 7.1e-08 60.1 57 52.6
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 7.1e-08 60.1 47 72.3
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 7.1e-08 60.1 47 72.3
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 7.1e-08 60.1 47 72.3
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 7.1e-08 60.1 50 64.0
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 7.1e-08 60.1 50 56.0
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 7.1e-08 60.1 48 72.9
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 7.1e-08 60.1 73 52.1
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 7.1e-08 60.1 47 57.4
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 9.2e-08 59.7 60 58.3
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 9.2e-08 59.7 48 68.8
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 1.2e-07 59.3 57 52.6
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-07 59.3 52 69.2
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.2e-07 59.3 52 63.5
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.6e-07 58.9 48 72.9
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 1.6e-07 58.9 48 72.9
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 1.6e-07 58.9 48 72.9
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 1.6e-07 58.9 54 63.0
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 1.6e-07 58.9 52 53.8
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.6e-07 58.9 53 60.4
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.6e-07 58.9 53 60.4
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 1.6e-07 58.9 58 60.3
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 1.6e-07 58.9 48 70.8
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.6e-07 58.9 71 49.3
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.6e-07 58.9 52 65.4
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 2.1e-07 58.5 52 65.4
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 2.1e-07 58.5 52 65.4
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 2.1e-07 58.5 43 72.1
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 2.1e-07 58.5 48 72.9
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.1e-07 58.5 52 69.2
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 2.1e-07 58.5 56 60.7
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 2.1e-07 58.5 54 64.8
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 2.7e-07 58.2 67 52.2
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 2.7e-07 58.2 76 52.6
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 2.7e-07 58.2 47 68.1
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 2.7e-07 58.2 47 68.1
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.7e-07 58.2 47 70.2
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 2.7e-07 58.2 46 54.3
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 2.7e-07 58.2 69 50.7
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 3.5e-07 57.8 52 61.5
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 3.5e-07 57.8 59 54.2
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.5e-07 57.8 59 55.9
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 3.5e-07 57.8 47 70.2
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 4.6e-07 57.4 57 50.9
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 4.6e-07 57.4 57 50.9
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 4.6e-07 57.4 56 53.6
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 4.6e-07 57.4 50 54.0
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 4.6e-07 57.4 60 56.7
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 4.6e-07 57.4 52 67.3
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 4.6e-07 57.4 52 65.4
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 4.6e-07 57.4 48 68.8
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 4.6e-07 57.4 59 52.5
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 6.0e-07 57.0 53 64.2
MD01G1028400 Malus domestica HOM05D002385 ORTHO05D002245 6.0e-07 57.0 48 66.7
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 6.0e-07 57.0 48 66.7
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 6.0e-07 57.0 53 64.2
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 7.8e-07 56.6 75 44.0
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 7.8e-07 56.6 49 71.4
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 7.8e-07 56.6 64 50.0
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 7.8e-07 56.6 48 68.8
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 7.8e-07 56.6 54 63.0
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 7.8e-07 56.6 48 62.5
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.0e-06 56.2 53 60.4
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.0e-06 56.2 53 58.5
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 1.0e-06 56.2 47 68.1
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 1.0e-06 56.2 47 61.7
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.0e-06 56.2 48 68.8
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.0e-06 56.2 48 68.8
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 1.3e-06 55.8 56 51.8
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 1.3e-06 55.8 68 47.1
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.3e-06 55.8 54 61.1
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 1.7e-06 55.5 68 47.1
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.3e-06 55.1 56 53.6
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 2.3e-06 55.1 51 62.7
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 2.3e-06 55.1 67 56.7
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 2.3e-06 55.1 68 48.5
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 2.3e-06 55.1 49 67.3
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 3.0e-06 54.7 62 53.2
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 3.0e-06 54.7 59 54.2
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 3.9e-06 54.3 58 48.3
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 3.9e-06 54.3 48 60.4
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 5.1e-06 53.9 59 61.0
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 5.1e-06 53.9 56 51.8
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 5.1e-06 53.9 53 58.5
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 6.6e-06 53.5 56 51.8
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 6.6e-06 53.5 59 40.7
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 6.6e-06 53.5 52 55.8
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 8.6e-06 53.1 56 51.8
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 8.6e-06 53.1 56 51.8
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 8.6e-06 53.1 56 51.8
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 8.6e-06 53.1 59 50.8
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 8.6e-06 53.1 59 50.8
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 8.6e-06 53.1 56 51.8
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 8.6e-06 53.1 56 51.8
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 8.6e-06 53.1 52 61.5
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 8.6e-06 53.1 50 64.0


User provided reference genes

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