Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 8.4e-88 327.0 169 100.0
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.2e-86 323.2 169 98.8
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 4.1e-74 281.6 169 89.3
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 3.7e-67 258.5 169 81.1
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 1.0e-64 250.4 169 79.3
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 5.9e-57 224.6 169 72.8
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 1.3e-56 223.4 172 68.6
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 1.7e-56 223.0 174 70.1
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 2.9e-56 222.2 174 66.7
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 1.5e-55 219.9 168 72.0
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 9.4e-55 217.2 169 66.9
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.1e-54 216.1 173 65.9
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.1e-54 216.1 172 66.3
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 2.7e-54 215.7 169 67.5
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 1.0e-53 213.8 169 65.7
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 1.4e-53 213.4 169 66.3
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.8e-53 213.0 176 68.2
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.3e-53 212.6 173 64.2
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 3.0e-53 212.2 183 62.8
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 4.0e-53 211.8 170 69.4
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.5e-52 209.9 168 63.7
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 2.6e-52 209.1 181 62.4
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 3.3e-52 208.8 164 67.7
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 3.3e-52 208.8 172 64.5
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 3.3e-52 208.8 169 64.5
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 4.4e-52 208.4 175 63.4
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 3.7e-51 205.3 171 65.5
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 4.8e-51 204.9 168 65.5
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 6.3e-51 204.5 178 63.5
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 8.3e-51 204.1 161 63.4
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 8.3e-51 204.1 167 62.3
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 2.0e-49 199.5 175 60.6
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 3.5e-49 198.7 170 62.4
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 3.5e-49 198.7 170 62.4
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 1.0e-48 197.2 175 60.0
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.3e-48 196.8 179 59.8
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.9e-48 195.7 172 59.9
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 5.0e-48 194.9 162 64.2
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 1.5e-47 193.4 173 60.7
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 1.5e-47 193.4 167 61.7
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 3.2e-47 192.2 175 60.0
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.2e-47 191.8 176 60.2
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 5.5e-47 191.4 170 60.6
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 7.2e-47 191.0 172 61.6
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 9.4e-47 190.7 175 60.0
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 9.4e-47 190.7 171 60.2
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.2e-46 190.3 172 58.1
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.2e-46 190.3 168 63.1
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 2.7e-46 189.1 162 63.0
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 4.7e-46 188.3 173 59.0
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 4.7e-46 188.3 172 59.3
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 8.0e-46 187.6 176 59.7
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 1.0e-45 187.2 109 86.2
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 1.8e-45 186.4 172 58.7
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 1.8e-45 186.4 172 58.7
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.8e-45 186.4 166 59.6
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 1.8e-45 186.4 174 58.0
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 3.0e-45 185.7 165 63.0
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 4.0e-45 185.3 172 58.1
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 6.8e-45 184.5 178 56.7
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.2e-44 183.7 177 58.8
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 1.5e-44 183.3 181 57.5
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.6e-44 182.6 173 56.6
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 4.4e-44 181.8 179 55.9
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 4.4e-44 181.8 158 60.8
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 5.7e-44 181.4 185 57.8
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 7.5e-44 181.0 180 57.2
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 1.3e-43 180.3 170 61.8
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 1.7e-43 179.9 168 59.5
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 6.3e-43 177.9 167 58.1
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 6.3e-43 177.9 171 58.5
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 8.3e-43 177.6 178 56.2
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.1e-42 177.2 169 57.4
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 4.1e-42 175.3 172 57.6
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.2e-41 173.7 172 55.2
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.2e-41 173.7 179 53.1
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.2e-41 173.7 179 54.7
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 1.2e-41 173.7 179 54.7
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 1.6e-41 173.3 171 56.7
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.7e-41 172.6 167 56.9
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 1.0e-40 170.6 178 52.8
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 1.0e-40 170.6 169 58.0
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 3.8e-40 168.7 158 55.7
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.5e-39 166.8 178 52.2
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 3.3e-39 165.6 168 54.8
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 4.2e-39 165.2 168 54.8
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 5.5e-39 164.9 135 63.0
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 7.2e-39 164.5 163 53.4
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.6e-38 163.3 164 53.7
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.6e-38 163.3 161 56.5
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 3.6e-38 162.2 169 55.0
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 3.6e-38 162.2 112 74.1
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 3.6e-38 162.2 162 53.1
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 4.7e-38 161.8 169 52.1
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 8.0e-38 161.0 153 58.2
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.0e-37 160.6 104 78.8
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.0e-37 160.6 241 44.4
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 1.4e-37 160.2 162 51.9
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 5.2e-37 158.3 124 62.1
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 6.8e-37 157.9 157 52.9
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 8.9e-37 157.5 165 50.9
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.2e-36 157.1 164 52.4
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 2.6e-36 156.0 170 52.9
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 2.6e-36 156.0 178 50.0
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 3.4e-36 155.6 151 56.3
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 5.7e-36 154.8 139 59.0
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 9.8e-36 154.1 158 53.2
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 3.7e-35 152.1 174 50.0
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 3.1e-34 149.1 168 48.8
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 7.0e-34 147.9 130 59.2
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 9.2e-34 147.5 173 49.1
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.6e-33 146.7 171 48.5
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 2.0e-33 146.4 133 58.6
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 3.5e-33 145.6 133 58.6
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 3.5e-33 145.6 106 69.8
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 1.0e-32 144.1 129 58.9
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.7e-32 143.3 166 47.6
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.3e-32 142.9 169 52.7
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 1.1e-31 140.6 162 52.5
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 4.7e-30 135.2 187 45.5
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 4.4e-28 128.6 173 45.7
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 9.8e-28 127.5 97 68.0
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 1.4e-26 123.6 106 58.5
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 9.2e-26 120.9 76 80.3
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 2.0e-25 119.8 185 41.1
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 3.5e-25 119.0 112 54.5
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 6.6e-24 114.8 106 54.7
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 3.6e-22 109.0 127 49.6
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 3.6e-22 109.0 123 58.5
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 8.9e-21 104.4 163 39.3
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 6.4e-19 98.2 112 56.2
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 3.9e-16 89.0 103 48.5
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 3.9e-16 89.0 103 48.5
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 8.6e-16 87.8 97 50.5
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 9.9e-12 74.3 106 39.6
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.7e-09 66.2 62 53.2
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 4.6e-09 65.5 106 34.0
Nitab4.5_0001671g0020 Nicotiana tabacum HOM05D004876 ORTHO05D005488 9.5e-07 57.8 67 47.8
SMO347G0178 Selaginella moellendorffii HOM05D004876 ORTHO05D005488 1.6e-06 57.0 103 35.9
Oeu039385.1 Olea europaea HOM05D002276 ORTHO05D002381 2.8e-06 56.2 66 47.0
TPR.G24777 Trifolium pratense HOM05D000029 ORTHO05D008675 8.1e-06 54.7 45 66.7


User provided reference genes

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