Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 2.8e-55 218.4 113 100.0
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 2.6e-48 195.3 113 89.4
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 2.2e-36 155.6 111 78.4
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 2.4e-30 135.6 116 66.4
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 2.0e-29 132.5 116 65.5
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 1.7e-28 129.4 116 63.8
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 7.3e-27 124.0 115 59.1
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.6e-26 122.9 96 68.8
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 2.1e-26 122.5 105 61.9
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 4.7e-26 121.3 106 68.9
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 4.4e-24 114.8 110 60.0
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 1.1e-22 110.2 103 61.2
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 4.1e-22 108.2 108 56.5
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 4.1e-22 108.2 103 61.2
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 7.0e-22 107.5 103 59.2
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 1.2e-21 106.7 102 58.8
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.6e-21 106.3 103 59.2
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.6e-21 106.3 96 59.4
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 3.5e-21 105.1 91 65.9
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.5e-21 105.1 96 58.3
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 4.6e-21 104.8 96 58.3
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 4.6e-21 104.8 102 62.7
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 7.8e-21 104.0 97 59.8
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 3.0e-20 102.1 92 62.0
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 1.1e-19 100.1 103 54.4
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 1.1e-19 100.1 95 58.9
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 1.5e-19 99.8 103 56.3
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 1.5e-19 99.8 96 55.2
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.9e-19 99.4 103 55.3
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 2.5e-19 99.0 89 60.7
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 3.3e-19 98.6 96 58.3
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 4.3e-19 98.2 111 52.3
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 4.3e-19 98.2 111 52.3
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 4.3e-19 98.2 103 54.4
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 4.3e-19 98.2 112 50.0
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 4.3e-19 98.2 98 62.2
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 5.6e-19 97.8 101 55.4
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 7.3e-19 97.4 88 61.4
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 9.5e-19 97.1 112 51.8
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 1.2e-18 96.7 88 58.0
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 1.2e-18 96.7 94 57.4
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 2.1e-18 95.9 95 60.0
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 2.1e-18 95.9 89 60.7
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 2.8e-18 95.5 112 52.7
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 2.8e-18 95.5 88 58.0
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 4.7e-18 94.7 109 53.2
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 6.2e-18 94.4 86 59.3
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 8.0e-18 94.0 97 55.7
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 8.0e-18 94.0 88 59.1
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 1.4e-17 93.2 89 56.2
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 3.1e-17 92.0 95 55.8
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 3.1e-17 92.0 92 55.4
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 4.0e-17 91.7 99 52.5
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 4.0e-17 91.7 111 52.3
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 4.0e-17 91.7 109 51.4
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 5.2e-17 91.3 104 52.9
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 6.8e-17 90.9 89 57.3
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 6.8e-17 90.9 97 49.5
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 8.9e-17 90.5 120 45.0
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 4.4e-16 88.2 94 55.3
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 7.5e-16 87.4 109 46.8
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 2.2e-15 85.9 99 51.5
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 3.7e-15 85.1 111 50.5
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 3.7e-15 85.1 109 47.7
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 4.9e-15 84.7 89 53.9
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 4.9e-15 84.7 113 46.9
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 4.9e-15 84.7 89 50.6
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 4.1e-14 81.6 88 53.4
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 4.1e-14 81.6 88 48.9
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 4.1e-14 81.6 88 54.5
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 5.4e-14 81.3 111 45.9
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 9.2e-14 80.5 92 48.9
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 9.2e-14 80.5 88 50.0
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.6e-13 79.7 88 51.1
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.6e-13 79.7 88 51.1
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 6.0e-13 77.8 92 52.2
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 7.8e-13 77.4 88 46.6
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.0e-12 77.0 97 45.4
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 1.7e-12 76.3 96 45.8
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 5.0e-12 74.7 69 63.8
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 3.3e-11 72.0 97 45.4
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 9.5e-11 70.5 91 48.4
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 2.1e-10 69.3 87 43.7
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 2.3e-09 65.9 90 43.3
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 8.9e-09 63.9 83 41.0
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 4.4e-08 61.6 82 46.3
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 8.3e-07 57.4 60 51.7


User provided reference genes

Program Settings