Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G177400 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 1.5e-54 216.1 121 100.0
VMungo1080G1568 Vigna mungo HOM05D002758 ORTHO05D002885 4.2e-49 198.0 121 83.5
Glyma.13G365000 Glycine max HOM05D002758 ORTHO05D002885 9.5e-33 143.7 121 71.1
Glyma.15G008300 Glycine max HOM05D002758 ORTHO05D002885 6.8e-31 137.5 122 73.8
Medtr4g010530 Medicago truncatula HOM05D002758 ORTHO05D002885 1.2e-24 116.7 128 53.1
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 1.6e-24 116.3 139 50.4
Glyma.07G031000 Glycine max HOM05D002758 ORTHO05D002885 2.6e-22 109.0 139 47.5
Psat5g302120 Pisum sativum HOM05D002758 ORTHO05D002885 1.3e-21 106.7 134 47.0
TPR.G38648 Trifolium pratense HOM05D002758 ORTHO05D002885 1.3e-21 106.7 137 51.8
Phvul.010G155100 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 1.7e-21 106.3 133 51.9
VMungo0331G0585 Vigna mungo HOM05D002758 ORTHO05D002885 4.1e-20 101.7 133 53.4
Psat7g255440 Pisum sativum HOM05D002758 ORTHO05D002885 3.5e-19 98.6 131 55.0
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.0e-18 97.1 134 47.0
Medtr2g103750 Medicago truncatula HOM05D002758 ORTHO05D002885 1.0e-18 97.1 136 50.7
arahy.Tifrunner.gnm1.ann1.3WRP69 Arachis hypogaea HOM05D002758 ORTHO05D002885 1.7e-18 96.3 131 52.7
arahy.Tifrunner.gnm1.ann1.A8WRUN Arachis hypogaea HOM05D002758 ORTHO05D002885 1.7e-18 96.3 131 52.7
Lalb_Chr25g0279401 Lupinus albus HOM05D002758 ORTHO05D002885 1.9e-17 92.8 123 50.4
TPR.G37180 Trifolium pratense HOM05D002758 ORTHO05D002885 2.5e-17 92.4 140 43.6
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 5.6e-17 91.3 135 49.6
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 2.8e-16 89.0 135 47.4
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 3.6e-16 88.6 126 47.6
Lj3g0008770 Lotus japonicus HOM05D002758 ORTHO05D002885 4.7e-16 88.2 145 46.9
Lj3g0013801 Lotus japonicus HOM05D002758 ORTHO05D002885 4.7e-16 88.2 136 52.2
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 6.2e-16 87.8 126 42.1
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 5.2e-15 84.7 134 42.5
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 5.2e-15 84.7 139 39.6
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 2.0e-14 82.8 133 42.9
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 2.6e-14 82.4 130 48.5
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 3.4e-14 82.0 121 45.5
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 3.4e-14 82.0 121 45.5
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 3.4e-14 82.0 130 40.0
arahy.Tifrunner.gnm1.ann1.R8JN66 Arachis hypogaea HOM05D002758 ORTHO05D002885 5.8e-14 81.3 138 42.8
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 7.5e-14 80.9 129 45.7
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 7.5e-14 80.9 123 48.8
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 9.8e-14 80.5 137 46.7
arahy.Tifrunner.gnm1.ann1.FSE12S Arachis hypogaea HOM05D002758 ORTHO05D002885 9.8e-14 80.5 136 46.3
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 9.8e-14 80.5 119 45.4
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 1.3e-13 80.1 121 44.6
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 1.3e-13 80.1 125 44.8
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.7e-13 79.7 129 47.3
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 2.2e-13 79.3 123 47.2
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 2.9e-13 79.0 129 45.0
Lalb_Chr10g0096781 Lupinus albus HOM05D002758 ORTHO05D002885 3.7e-13 78.6 132 41.7
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 4.9e-13 78.2 129 40.3
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 4.9e-13 78.2 125 44.0
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 4.9e-13 78.2 140 44.3
arahy.Tifrunner.gnm1.ann1.66WDLV Arachis hypogaea HOM05D002758 ORTHO05D002885 6.4e-13 77.8 131 45.0
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 8.3e-13 77.4 135 45.9
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 8.3e-13 77.4 136 44.9
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 1.4e-12 76.6 138 42.0
Lalb_Chr01g0012401 Lupinus albus HOM05D002758 ORTHO05D002885 1.4e-12 76.6 128 41.4
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 1.9e-12 76.3 139 40.3
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 2.4e-12 75.9 129 41.1
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 4.1e-12 75.1 133 47.4
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 7.1e-12 74.3 131 40.5
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 7.1e-12 74.3 131 41.2
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 7.1e-12 74.3 141 39.0
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 9.2e-12 73.9 134 44.0
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 9.2e-12 73.9 134 40.3
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 9.2e-12 73.9 130 47.7
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 1.2e-11 73.6 139 46.0
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 1.2e-11 73.6 139 46.0
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.2e-11 73.6 131 43.5
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 2.7e-11 72.4 127 41.7
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 3.5e-11 72.0 142 40.8
AT1G52565 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 4.6e-11 71.6 135 43.7
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 4.6e-11 71.6 131 46.6
Aa31LG8G2960 Aethionema arabicum HOM05D002758 ORTHO05D002885 6.0e-11 71.2 133 47.4
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 6.0e-11 71.2 142 40.8
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 6.0e-11 71.2 131 47.3
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 6.0e-11 71.2 137 40.1
BcaB02g10984 Brassica carinata HOM05D002758 ORTHO05D002885 1.0e-10 70.5 136 46.3
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 1.0e-10 70.5 127 37.0
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 1.3e-10 70.1 133 40.6
Sp3g14090 Schrenkiella parvula HOM05D002758 ORTHO05D002885 1.3e-10 70.1 136 44.9
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.7e-10 69.7 131 43.5
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 1.7e-10 69.7 132 40.2
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 2.3e-10 69.3 137 40.1
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 2.3e-10 69.3 137 43.1
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 3.0e-10 68.9 137 45.3
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 3.0e-10 68.9 131 45.8
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 3.0e-10 68.9 130 41.5
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 3.9e-10 68.6 137 39.4
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 3.9e-10 68.6 133 42.1
Sc10g0005850 Simmondsia chinensis HOM05D002758 ORTHO05D002885 3.9e-10 68.6 142 38.0
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 5.1e-10 68.2 129 41.9
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 6.6e-10 67.8 139 39.6
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 6.6e-10 67.8 139 39.6
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 6.6e-10 67.8 139 39.6
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 6.6e-10 67.8 128 41.4
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 6.6e-10 67.8 128 41.4
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 1.1e-09 67.0 147 39.5
Sp1g39120 Schrenkiella parvula HOM05D002758 ORTHO05D002885 1.1e-09 67.0 132 47.0
BcaB04g20905 Brassica carinata HOM05D002758 ORTHO05D002885 1.5e-09 66.6 136 41.9
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.9e-09 66.2 128 40.6
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 2.5e-09 65.9 138 41.3
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 3.3e-09 65.5 122 38.5
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 5.6e-09 64.7 136 44.1
BcaC05g28933 Brassica carinata HOM05D002758 ORTHO05D002885 7.3e-09 64.3 135 39.3
BraA05t22185Z Brassica rapa HOM05D002758 ORTHO05D002885 2.1e-08 62.8 135 40.0
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.1e-08 62.8 132 43.2
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.1e-08 62.8 132 43.2
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 2.1e-08 62.8 132 43.2
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 2.8e-08 62.4 117 41.0
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 3.6e-08 62.0 131 44.3
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.6e-08 62.0 131 42.0
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 4.7e-08 61.6 129 39.5
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 6.2e-08 61.2 136 45.6
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 6.2e-08 61.2 130 40.8
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 6.2e-08 61.2 131 42.0
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 8.1e-08 60.8 132 42.4
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 8.1e-08 60.8 139 36.7
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 8.1e-08 60.8 139 37.4
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 8.1e-08 60.8 135 45.2
EL10Ac9g21912 Beta vulgaris HOM05D002758 ORTHO05D002885 1.1e-07 60.5 128 39.1
A05p33610 Brassica napus HOM05D002758 ORTHO05D002885 1.1e-07 60.5 135 37.8
C05p50610 Brassica napus HOM05D002758 ORTHO05D002885 1.1e-07 60.5 135 37.8
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.1e-07 60.5 142 43.0
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 1.1e-07 60.5 126 38.9
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 1.1e-07 60.5 138 37.0
PSO063G4123 Papaver somniferum HOM05D002758 ORTHO05D002885 1.1e-07 60.5 131 43.5
Carub.0001s4153 Capsella rubella HOM05D002758 ORTHO05D002885 1.4e-07 60.1 137 40.9
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 1.4e-07 60.1 135 35.6
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 1.4e-07 60.1 145 41.4
BolC5t33807H Brassica oleracea HOM05D002758 ORTHO05D002885 1.8e-07 59.7 135 37.8
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.8e-07 59.7 139 36.7
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.8e-07 59.7 133 37.6
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 1.8e-07 59.7 134 39.6
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 2.3e-07 59.3 139 39.6
Nitab4.5_0000373g0020 Nicotiana tabacum HOM05D002758 ORTHO05D002885 2.3e-07 59.3 128 39.1
Medtr4g114600 Medicago truncatula HOM05D002758 ORTHO05D002885 3.1e-07 58.9 142 35.9
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 4.0e-07 58.5 117 34.2
Hund06567 Selenicereus undatus HOM05D002758 ORTHO05D002885 4.0e-07 58.5 134 34.3
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 5.2e-07 58.2 140 40.0
BcaB06g25687 Brassica carinata HOM05D002758 ORTHO05D002885 6.8e-07 57.8 135 43.0
PSO170G3914 Papaver somniferum HOM05D002758 ORTHO05D002885 6.8e-07 57.8 131 43.5
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 8.9e-07 57.4 136 42.6
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 8.9e-07 57.4 145 35.9
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.2e-06 57.0 136 39.0
Sc18g0000570 Simmondsia chinensis HOM05D002758 ORTHO05D002885 1.2e-06 57.0 132 38.6
CANSAT11G2365 Cannabis sativa HOM05D002758 ORTHO05D002885 2.0e-06 56.2 151 35.8
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 2.6e-06 55.8 143 35.7
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 2.6e-06 55.8 128 46.9
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 2.6e-06 55.8 136 35.3
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 3.4e-06 55.5 130 35.4
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 3.4e-06 55.5 137 38.7
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 3.4e-06 55.5 134 36.6
Peaxi162Scf00332g00756 Petunia axillaris HOM05D002758 ORTHO05D002885 3.4e-06 55.5 127 39.4
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 3.4e-06 55.5 127 36.2
ClCG06G011200 Citrullus lanatus HOM05D002758 ORTHO05D002885 4.4e-06 55.1 133 37.6
Sed0025517 Sechium edule HOM05D002758 ORTHO05D002885 5.8e-06 54.7 120 43.3
Lj4g0007884 Lotus japonicus HOM05D002758 ORTHO05D002885 7.6e-06 54.3 123 39.8
PSO210G5441 Papaver somniferum HOM05D002758 ORTHO05D002885 7.6e-06 54.3 115 33.9
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 7.6e-06 54.3 131 35.1
Aa31LG10G2440 Aethionema arabicum HOM05D002758 ORTHO05D002885 9.9e-06 53.9 152 34.2
FAN09G3789 Fragaria x ananassa HOM05D002758 ORTHO05D002885 9.9e-06 53.9 104 39.4
Glyma.13G166500 Glycine max HOM05D002758 ORTHO05D002885 9.9e-06 53.9 134 39.6
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 9.9e-06 53.9 134 41.8
TPR.G26478 Trifolium pratense HOM05D002758 ORTHO05D002885 9.9e-06 53.9 155 36.8


User provided reference genes

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