Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.9e-113 412.5 207 100.0
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 3.5e-104 381.7 201 94.0
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.8e-95 352.8 206 85.4
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 2.8e-93 345.5 207 85.5
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 5.7e-70 268.1 217 69.6
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.4e-68 262.7 212 68.9
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 1.2e-67 260.4 212 68.4
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 1.9e-65 253.1 212 66.5
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.6e-64 250.0 206 68.0
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 3.6e-64 248.8 216 64.8
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 2.3e-55 219.5 181 67.4
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 2.3e-55 219.5 181 67.4
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 2.0e-54 216.5 169 65.7
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 5.9e-51 204.9 206 52.9
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.1e-49 200.7 207 56.5
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 5.5e-49 198.4 183 56.8
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.8e-48 196.1 213 53.1
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 3.6e-48 195.7 206 54.9
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.4e-47 193.7 206 51.5
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 2.3e-47 193.0 207 51.7
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 3.4e-46 189.1 173 53.8
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 4.4e-46 188.7 210 48.6
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 7.5e-46 188.0 204 54.4
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.7e-45 186.8 176 57.4
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.7e-45 186.8 210 48.6
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 2.2e-45 186.4 204 52.5
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.8e-45 186.0 206 50.5
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.8e-45 186.0 207 50.2
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 3.7e-45 185.7 210 49.0
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.9e-45 185.3 176 57.4
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 6.3e-45 184.9 183 56.3
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 8.3e-45 184.5 183 56.3
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 1.4e-44 183.7 185 53.5
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 1.8e-44 183.3 186 52.7
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 3.1e-44 182.6 186 51.1
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.1e-44 182.2 197 50.3
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.2e-43 180.6 206 51.5
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-43 180.6 176 55.1
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.2e-43 180.6 182 53.8
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.2e-43 180.6 210 49.0
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 1.6e-43 180.3 186 51.1
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.6e-43 180.3 186 49.5
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 1.6e-43 180.3 210 48.1
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.0e-43 179.9 172 55.2
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 2.7e-43 179.5 176 55.7
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 3.5e-43 179.1 184 49.5
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 3.5e-43 179.1 210 49.0
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.5e-43 179.1 176 54.0
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.5e-43 178.7 178 54.5
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 7.8e-43 177.9 210 47.1
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 1.0e-42 177.6 183 49.7
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 2.3e-42 176.4 202 52.0
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 2.9e-42 176.0 183 49.2
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 3.8e-42 175.6 186 47.8
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 3.8e-42 175.6 186 47.8
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 5.0e-42 175.3 176 54.0
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 6.6e-42 174.9 202 49.0
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 6.6e-42 174.9 174 54.0
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 6.6e-42 174.9 186 47.8
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 1.5e-41 173.7 209 45.9
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.5e-41 173.7 132 61.4
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 4.3e-41 172.2 201 49.3
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 5.6e-41 171.8 186 46.8
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 5.6e-41 171.8 175 50.9
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.3e-41 171.4 201 47.3
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 9.5e-41 171.0 191 47.6
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 3.6e-40 169.1 180 51.1
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.6e-40 169.1 201 47.8
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 4.7e-40 168.7 180 51.1
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 4.7e-40 168.7 170 50.0
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 4.7e-40 168.7 172 51.2
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 6.1e-40 168.3 138 59.4
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 6.1e-40 168.3 201 47.8
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 6.1e-40 168.3 136 59.6
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.4e-39 167.2 178 48.3
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.4e-39 167.2 201 47.3
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 8.9e-39 164.5 176 47.7
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 4.4e-38 162.2 203 48.3
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 4.4e-38 162.2 177 46.3
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 9.8e-38 161.0 176 46.6
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 9.8e-38 161.0 182 50.0
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.9e-37 159.5 198 49.0
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.7e-37 159.1 182 49.5
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 3.7e-37 159.1 133 54.9
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.9e-37 158.7 182 48.4
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 6.4e-37 158.3 136 56.6
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.3e-37 157.9 186 48.9
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 1.4e-36 157.1 173 52.0
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.4e-36 157.1 173 49.7
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.4e-36 156.4 187 49.2
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.2e-36 156.0 178 48.3
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.2e-35 154.1 180 47.8
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.2e-35 154.1 211 41.7
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.6e-35 153.7 176 48.3
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.5e-35 152.5 209 43.5
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.3e-34 150.6 216 43.5
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 2.3e-34 149.8 194 44.8
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 3.0e-34 149.4 171 47.4
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 3.0e-34 149.4 172 48.3
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 8.6e-34 147.9 158 48.7
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 8.6e-34 147.9 207 42.5
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 1.9e-33 146.7 210 41.0
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 3.3e-33 146.0 173 49.7
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 4.3e-33 145.6 173 46.8
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 5.6e-33 145.2 209 45.0
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.1e-32 143.3 194 44.3
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.6e-32 142.5 194 44.3
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 4.7e-32 142.1 133 54.1
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 4.7e-32 142.1 171 46.8
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 6.2e-32 141.7 137 54.7
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 1.1e-31 141.0 171 44.4
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-31 141.0 183 45.4
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 1.1e-31 141.0 138 55.8
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 4.0e-31 139.0 135 56.3
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 6.8e-31 138.3 135 55.6
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 8.9e-31 137.9 138 53.6
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-30 137.5 186 40.9
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 2.0e-30 136.7 170 45.9
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.6e-30 136.3 138 52.9
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.6e-30 136.3 202 44.1
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 2.6e-30 136.3 172 44.2
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.4e-30 136.0 138 52.9
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.5e-30 134.8 138 52.9
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 9.8e-30 134.4 187 40.1
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.7e-29 133.7 134 50.7
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 2.2e-29 133.3 181 43.1
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 2.2e-29 133.3 136 50.0
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.9e-29 132.9 166 46.4
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 3.7e-29 132.5 207 42.0
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 4.9e-29 132.1 166 43.4
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 4.9e-29 132.1 174 40.8
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 4.9e-29 132.1 212 37.7
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 8.3e-29 131.3 167 44.3
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 8.3e-29 131.3 167 44.3
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.4e-28 130.6 155 45.8
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 1.4e-28 130.6 138 48.6
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 1.9e-28 130.2 188 39.9
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 3.2e-28 129.4 211 43.6
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.2e-28 129.4 136 52.9
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 4.1e-28 129.0 166 41.6
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.1e-28 129.0 138 47.1
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 7.0e-28 128.3 185 43.2
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 7.0e-28 128.3 170 41.8
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 9.2e-28 127.9 166 41.6
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.2e-27 127.5 174 41.4
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.2e-27 127.5 209 36.8
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 2.7e-27 126.3 174 41.4
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 2.7e-27 126.3 204 39.2
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 4.6e-27 125.6 161 48.4
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 6.0e-27 125.2 140 45.0
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 1.0e-26 124.4 109 56.0
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.3e-26 123.2 138 47.1
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 3.9e-26 122.5 133 51.9
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 5.1e-26 122.1 167 43.1
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.5e-25 120.6 168 39.3
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 1.6e-24 117.1 190 37.9
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 2.1e-24 116.7 164 45.7
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 2.8e-24 116.3 132 44.7
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 2.6e-22 109.8 166 42.2
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.3e-18 97.4 129 44.2
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 6.8e-15 85.1 60 65.0
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 4.9e-13 79.0 63 60.3
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 6.4e-13 78.6 118 35.6
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 2.4e-12 76.6 39 79.5
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 8.1e-08 61.6 40 57.5
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-07 61.2 40 57.5
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 1.8e-07 60.5 133 30.1


User provided reference genes

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