Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 0.0e+00 1421.8 743 100.0
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 0.0e+00 1209.5 767 83.7
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 0.0e+00 1199.5 750 87.6
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 0.0e+00 1167.5 752 85.1
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.3e-302 1042.0 735 75.5
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 3.6e-276 954.9 716 72.3
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 3.1e-275 951.8 754 70.3
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 2.4e-267 925.6 753 68.0
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 3.8e-265 918.3 663 74.4
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.5e-263 911.8 722 70.2
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 4.8e-252 874.8 717 70.6
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 2.1e-247 859.4 752 64.4
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.1e-243 847.0 750 62.8
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.1e-243 847.0 752 64.8
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.3e-241 840.1 747 61.0
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 5.0e-241 838.2 605 71.9
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 2.5e-240 835.9 742 64.2
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 5.1e-238 828.2 755 62.6
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 8.7e-238 827.4 756 61.2
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 1.3e-236 823.5 740 62.3
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.1e-235 820.5 754 60.9
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 6.9e-235 817.8 717 67.8
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 2.6e-234 815.8 747 59.6
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 3.4e-234 815.5 745 58.8
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 2.2e-233 812.8 746 60.3
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 3.8e-233 812.0 747 60.0
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 1.1e-232 810.4 759 60.7
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.4e-232 810.1 745 58.5
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.4e-232 810.1 764 58.5
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.2e-232 807.7 742 58.8
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.6e-231 806.6 742 58.9
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.6e-231 805.4 722 62.6
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 1.0e-230 803.9 748 62.6
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 3.9e-230 802.0 794 57.6
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.7e-230 801.2 714 59.5
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.7e-228 795.4 749 59.0
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.2e-226 790.4 757 61.6
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.1e-224 783.9 754 57.6
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.9e-224 783.1 718 59.9
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 5.5e-224 781.6 749 57.8
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 7.2e-224 781.2 750 58.5
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.6e-223 778.9 785 56.9
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 8.8e-222 774.2 785 56.7
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 4.8e-220 768.5 782 57.2
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.1e-219 767.3 782 57.2
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.4e-219 766.9 712 61.4
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 3.5e-218 762.3 811 54.3
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 7.7e-218 761.1 769 56.6
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 9.4e-216 754.2 750 58.3
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 5.2e-214 748.4 751 56.2
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 4.4e-213 745.3 754 55.4
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 7.0e-211 738.0 758 55.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 3.5e-210 735.7 815 54.2
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 4.5e-210 735.3 853 51.3
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.1e-208 730.7 639 63.4
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.1e-208 730.7 818 53.5
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.5e-208 730.3 853 51.2
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 2.1e-207 726.5 737 57.0
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.0e-206 722.6 764 55.9
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 2.0e-205 719.9 758 54.0
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 9.8e-205 717.6 817 52.3
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 6.3e-204 714.9 828 51.9
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 2.4e-203 713.0 830 51.1
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.4e-203 713.0 824 50.8
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 3.1e-203 712.6 819 51.0
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 9.1e-203 711.1 825 50.4
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 7.7e-202 708.0 831 50.1
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 7.7e-202 708.0 825 50.3
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 3.8e-201 705.7 783 52.2
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.1e-200 704.1 733 55.3
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 5.5e-200 701.8 753 53.8
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 4.7e-199 698.7 773 53.0
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 6.1e-199 698.4 776 52.7
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.0e-198 696.0 814 51.0
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 3.0e-198 696.0 727 55.6
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 5.2e-198 695.3 794 50.3
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 9.8e-197 691.0 772 51.7
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.1e-195 687.6 815 49.4
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 8.6e-193 677.9 808 51.0
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.5e-192 677.2 694 56.8
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 4.3e-192 675.6 753 52.5
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.2e-191 674.1 752 50.9
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 2.1e-191 673.3 752 52.0
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.1e-191 673.3 709 55.6
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.6e-191 672.5 754 51.6
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 6.8e-190 668.3 755 50.6
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 9.8e-189 664.5 747 51.5
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.4e-187 660.6 793 49.1
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 7.0e-187 658.3 749 51.0
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 3.5e-186 656.0 813 50.6
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 3.5e-186 656.0 753 51.3
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.0e-185 654.4 749 51.3
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 8.6e-185 651.4 749 51.1
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 2.5e-184 649.8 743 51.5
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 4.3e-184 649.0 750 50.8
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 4.3e-184 649.0 780 51.4
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 5.6e-184 648.7 749 49.9
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.2e-183 647.5 695 53.2
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 3.6e-183 646.0 757 49.0
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 6.2e-183 645.2 624 56.7
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.0e-182 644.4 752 50.1
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.0e-182 644.4 756 48.4
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 6.8e-182 641.7 749 49.8
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 8.3e-180 634.8 749 49.1
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 2.0e-178 630.2 752 49.3
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 3.0e-177 626.3 752 49.2
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 3.6e-175 619.4 749 48.9
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.4e-171 605.5 858 46.9
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-170 604.4 752 48.9
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 2.3e-161 573.5 634 49.2
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.0e-158 562.8 675 50.5
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.2e-154 551.2 442 61.8
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 5.1e-153 545.8 860 40.9
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 8.7e-153 545.0 844 41.8
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.9e-152 543.9 836 42.5
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 8.1e-143 511.9 760 43.9
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.8e-134 484.2 732 43.2
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 5.8e-133 479.2 437 57.0
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 4.9e-132 476.1 780 40.3
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 4.9e-132 476.1 462 54.3
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 6.7e-105 386.0 663 39.7
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.6e-98 364.8 743 36.9
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 9.7e-96 355.5 691 35.9
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 5.4e-86 323.2 628 37.1
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.5e-85 320.5 477 40.7
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.7e-84 318.2 477 41.9
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.8e-82 310.8 480 41.0
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.2e-80 305.4 298 55.4
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.4e-78 296.6 437 37.5
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.9e-77 293.1 482 36.3
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.9e-77 293.1 482 36.3
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.6e-76 289.7 478 37.7
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.8e-73 279.6 462 38.7
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.7e-66 256.9 533 39.8
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 2.3e-65 254.6 386 46.6
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.5e-64 251.9 515 34.6
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 2.6e-64 251.1 626 37.9
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 2.7e-53 214.5 190 53.2
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.3e-34 152.5 205 44.9
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 7.6e-32 143.3 397 35.5
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 6.2e-26 123.6 89 57.3
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 9.9e-24 116.3 71 77.5
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.0e-20 106.3 420 31.0
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 2.2e-15 88.6 81 51.9
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 3.9e-12 77.8 49 75.5
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.7e-12 76.6 54 61.1
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 2.8e-10 71.6 50 54.0
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 4.8e-10 70.9 52 53.8
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.8e-09 68.9 63 47.6
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.8e-09 68.9 63 47.6
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 6.9e-09 67.0 44 75.0
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.0e-08 65.5 50 50.0
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 2.2e-07 62.0 65 52.3
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 8.5e-07 60.1 76 46.1


User provided reference genes

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