Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 1.3e-260 902.5 438 100.0
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.1e-240 836.3 439 92.0
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 1.6e-226 789.3 440 86.8
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 2.0e-221 772.3 438 86.1
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 2.9e-204 715.3 447 78.1
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 1.9e-200 702.6 448 76.3
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 1.6e-199 699.5 438 78.5
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 1.1e-195 686.8 439 76.5
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 7.0e-195 684.1 442 77.4
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 4.6e-194 681.4 442 76.5
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 2.0e-189 666.0 449 74.6
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 7.1e-187 657.5 448 72.5
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 2.8e-183 645.6 458 69.7
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 1.5e-181 639.8 450 68.9
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 2.0e-181 639.4 482 65.6
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 9.9e-181 637.1 459 67.3
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 1.6e-178 629.8 445 70.1
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 3.5e-178 628.6 442 70.1
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.3e-177 626.7 442 69.7
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 2.3e-177 625.9 439 70.2
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.3e-177 625.9 459 67.3
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 5.1e-177 624.8 454 68.3
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 5.1e-177 624.8 442 69.9
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 1.1e-176 623.6 398 75.9
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.1e-176 623.6 460 67.0
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.5e-176 623.2 442 69.9
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.6e-176 621.3 459 66.9
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 7.3e-176 620.9 442 69.5
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 7.3e-176 620.9 461 67.0
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 2.8e-175 619.0 438 68.5
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 4.0e-174 615.1 379 74.7
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 1.2e-173 613.6 458 66.6
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.5e-173 613.2 471 65.6
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 1.5e-173 613.2 452 66.8
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 2.0e-173 612.8 456 64.9
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 3.4e-173 612.1 440 68.4
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 3.4e-173 612.1 454 65.9
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 7.6e-173 610.9 360 78.3
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 9.9e-173 610.5 452 65.9
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 1.3e-172 610.1 439 68.6
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 2.2e-172 609.4 384 74.2
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.9e-172 609.0 456 67.1
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 3.8e-172 608.6 398 72.1
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 4.9e-172 608.2 389 73.3
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 8.4e-172 607.4 457 65.9
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.1e-171 607.1 449 66.1
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 2.4e-171 605.9 393 71.5
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 4.2e-171 605.1 450 66.7
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 9.3e-171 604.0 417 71.5
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 2.1e-170 602.8 445 67.6
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 2.1e-170 602.8 416 71.6
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 2.1e-170 602.8 453 66.9
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.1e-170 602.8 456 64.7
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 2.7e-170 602.4 440 67.7
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 6.0e-170 601.3 377 75.1
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 1.3e-169 600.1 459 66.9
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.7e-169 599.7 455 67.3
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 1.1e-168 597.0 449 65.7
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 1.9e-168 596.3 377 73.7
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 7.3e-168 594.3 383 72.1
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 7.3e-168 594.3 371 74.4
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 4.8e-167 591.7 348 76.7
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 6.2e-167 591.3 450 65.6
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 6.2e-167 591.3 476 64.1
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 6.2e-167 591.3 459 66.0
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 3.1e-166 589.0 452 65.3
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 4.0e-166 588.6 390 71.3
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 5.3e-166 588.2 454 65.9
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 5.3e-166 588.2 453 65.8
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 5.3e-166 588.2 453 65.8
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 9.0e-166 587.4 384 71.1
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 5.8e-165 584.7 377 73.2
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 9.9e-165 583.9 456 64.0
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 9.9e-165 583.9 384 72.4
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 2.9e-164 582.4 346 77.2
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 3.8e-164 582.0 453 64.0
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 1.1e-163 580.5 384 70.3
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 1.1e-163 580.5 447 64.4
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.4e-163 580.1 455 65.3
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 4.2e-163 578.6 454 63.0
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 7.1e-163 577.8 454 63.4
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 7.1e-163 577.8 461 61.0
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.6e-162 576.6 453 64.2
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 2.1e-162 576.2 421 65.3
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 2.7e-162 575.9 449 63.0
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 3.5e-162 575.5 390 69.0
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 3.5e-162 575.5 456 62.1
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 3.5e-162 575.5 456 62.1
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 4.6e-162 575.1 450 64.4
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 2.3e-161 572.8 390 69.5
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 5.1e-161 571.6 454 62.1
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 1.5e-160 570.1 379 69.7
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 1.5e-160 570.1 420 65.5
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 1.9e-160 569.7 410 67.1
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 2.5e-160 569.3 423 65.2
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 2.5e-160 569.3 454 63.0
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 9.6e-160 567.4 407 68.3
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 4.8e-159 565.1 471 60.3
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 6.2e-159 564.7 454 62.3
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 6.2e-159 564.7 394 67.0
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 8.1e-159 564.3 449 63.0
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 1.4e-158 563.5 377 69.5
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 2.4e-158 562.8 370 71.4
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 1.5e-157 560.1 409 66.3
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 3.8e-156 555.4 401 66.6
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 1.9e-155 553.1 407 65.8
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 3.2e-155 552.4 368 70.4
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 1.6e-154 550.1 412 65.0
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 2.7e-154 549.3 340 73.8
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 4.6e-154 548.5 485 58.4
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 1.5e-152 543.5 390 67.2
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 6.2e-151 538.1 351 70.7
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.8e-150 536.6 317 78.5
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 3.1e-150 535.8 348 72.7
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 6.9e-150 534.6 340 71.2
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 4.9e-148 528.5 348 70.7
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 1.5e-144 516.9 344 68.9
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 1.5e-144 516.9 337 70.0
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.7e-138 496.1 352 66.2
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 6.9e-134 481.5 374 62.6
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 4.2e-131 472.2 330 66.1
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 9.4e-131 471.1 293 75.4
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 3.3e-128 462.6 328 68.3
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 9.7e-128 461.1 343 65.3
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 4.8e-127 458.8 279 73.1
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 1.4e-121 440.7 342 61.7
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.4e-118 429.9 311 65.9
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 3.5e-117 426.0 334 59.0
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 1.7e-116 423.7 339 59.0
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 2.1e-114 416.8 331 58.0
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 4.7e-114 415.6 331 56.5
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 1.2e-112 411.0 247 77.3
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 3.4e-112 409.5 336 55.4
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 2.4e-94 350.1 319 58.3
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 6.1e-90 335.5 280 62.5
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 1.0e-89 334.7 346 47.1
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 5.0e-84 315.8 340 45.9
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 2.1e-77 293.9 326 47.5
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 1.7e-63 247.7 144 81.2
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 7.8e-61 238.8 217 59.4
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 4.6e-53 213.0 128 73.4
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 1.3e-36 158.3 163 43.6
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 6.7e-36 156.0 163 42.9
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.5e-35 154.8 242 38.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.1e-33 148.7 284 34.2
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 9.0e-33 145.6 79 83.5
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 6.5e-31 139.4 95 71.6
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 1.2e-24 118.6 74 64.9
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 5.7e-19 99.8 104 49.0
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 2.0e-16 91.3 82 50.0
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 7.4e-11 72.8 52 53.8
Glyma.15G221066 Glycine max HOM05D004738 ORTHO05D212055 1.5e-06 58.5 27 96.3


User provided reference genes

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