Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 2.1e-282 974.9 465 100.0
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.6e-261 905.6 500 87.0
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 7.4e-251 870.2 468 88.5
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 6.2e-250 867.1 460 88.0
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 3.3e-235 818.1 448 85.3
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 4.8e-226 787.7 468 82.5
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 1.0e-223 780.0 442 84.4
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 2.1e-221 772.3 468 80.1
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 9.1e-217 756.9 445 80.9
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 3.0e-212 741.9 476 75.0
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.8e-209 732.6 442 80.5
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 5.9e-208 727.6 463 76.2
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 5.9e-208 727.6 452 77.4
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.7e-207 726.1 443 79.5
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.9e-207 725.3 452 77.0
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 6.5e-207 724.2 452 77.2
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 6.5e-207 724.2 455 76.9
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 2.5e-206 722.2 456 76.1
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 2.1e-205 719.2 440 77.0
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 6.1e-205 717.6 458 77.7
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 1.8e-204 716.1 462 75.3
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 4.0e-204 714.9 465 73.8
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.5e-203 713.0 444 77.0
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 1.5e-203 713.0 456 75.9
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 5.7e-203 711.1 445 76.6
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 9.8e-203 710.3 468 74.1
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.3e-202 709.9 438 76.9
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 2.2e-202 709.1 447 76.5
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 3.7e-202 708.4 437 76.2
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 4.8e-202 708.0 456 74.1
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 6.3e-202 707.6 477 73.4
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 8.3e-202 707.2 468 73.7
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 8.3e-202 707.2 440 76.1
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.4e-201 706.4 470 73.2
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 2.4e-201 705.7 460 74.3
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.4e-201 705.7 449 75.1
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 2.4e-201 705.7 451 74.5
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.1e-201 705.3 456 73.9
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 3.1e-201 705.3 441 76.2
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 4.1e-201 704.9 447 75.8
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 7.0e-201 704.1 462 73.6
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 7.0e-201 704.1 467 73.4
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 7.0e-201 704.1 438 76.9
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 9.1e-201 703.7 470 72.8
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 1.2e-200 703.4 450 76.4
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.6e-200 703.0 365 88.5
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.6e-200 703.0 475 72.4
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.6e-200 703.0 438 75.6
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 2.0e-200 702.6 443 76.1
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.5e-200 701.8 475 72.2
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 3.5e-200 701.8 439 77.0
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.5e-200 701.4 436 76.4
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 7.7e-200 700.7 445 76.0
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 7.7e-200 700.7 440 77.7
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.3e-199 699.9 365 87.9
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.3e-199 699.9 457 74.0
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 2.2e-199 699.1 461 74.0
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.2e-199 699.1 450 75.3
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.9e-199 698.7 442 74.0
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 2.9e-199 698.7 442 76.0
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.9e-199 698.7 440 74.3
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 3.8e-199 698.4 457 73.7
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 3.8e-199 698.4 463 73.2
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 3.8e-199 698.4 440 74.8
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.8e-199 698.4 475 71.8
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 5.0e-199 698.0 464 73.7
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 5.0e-199 698.0 437 76.2
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 6.5e-199 697.6 465 73.3
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 6.5e-199 697.6 455 76.0
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 6.5e-199 697.6 440 74.1
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 1.1e-198 696.8 465 73.3
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.9e-198 696.0 440 74.1
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 3.2e-198 695.3 457 73.7
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 4.2e-198 694.9 470 72.1
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 5.5e-198 694.5 443 74.7
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.5e-198 694.5 447 73.4
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 9.4e-198 693.7 439 74.3
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.2e-197 693.3 438 76.3
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 3.6e-197 691.8 444 73.6
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 6.1e-197 691.0 456 75.4
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 1.4e-196 689.9 460 74.8
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.8e-196 689.5 438 74.2
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 4.0e-196 688.3 443 73.6
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 6.8e-196 687.6 463 72.8
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.0e-195 686.0 455 74.3
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.0e-195 686.0 445 75.7
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 9.8e-195 683.7 438 75.1
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.7e-194 682.9 446 74.0
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 6.3e-194 681.0 459 73.6
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 8.3e-194 680.6 439 72.0
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 3.1e-193 678.7 435 72.9
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 7.0e-193 677.6 440 73.2
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 9.1e-193 677.2 444 73.6
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.6e-192 676.4 440 72.3
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 1.7e-191 672.9 446 73.1
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 6.6e-191 671.0 463 69.8
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.1e-190 670.2 448 71.2
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.5e-190 669.8 440 72.0
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.5e-190 669.1 396 78.8
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 3.3e-190 668.7 436 72.5
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 7.2e-190 667.5 412 75.2
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 7.2e-190 667.5 436 75.0
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 9.5e-190 667.2 518 63.9
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 9.5e-190 667.2 462 69.9
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 1.2e-189 666.8 434 73.3
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.2e-189 666.8 437 73.9
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 2.8e-189 665.6 434 73.0
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.7e-187 657.9 442 71.7
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 1.7e-183 646.4 435 71.5
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 9.5e-182 640.6 375 77.9
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.0e-180 637.1 441 69.8
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 3.7e-178 628.6 445 69.9
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 6.4e-178 627.9 431 71.0
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 3.5e-176 622.1 437 68.2
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.3e-175 620.2 322 87.6
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 3.9e-175 618.6 444 68.9
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.3e-174 615.1 453 67.3
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.8e-172 609.8 322 85.7
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 6.4e-170 601.3 342 80.4
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 8.9e-164 580.9 291 91.4
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 1.7e-162 576.6 432 65.3
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.7e-160 569.3 377 69.0
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.0e-159 567.4 289 88.9
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 3.9e-159 565.5 417 65.9
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 5.1e-159 565.1 289 87.9
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 1.1e-148 530.8 344 75.3
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 6.4e-146 521.5 286 81.1
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.7e-144 516.2 334 68.3
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 6.0e-144 515.0 266 87.6
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 4.5e-139 498.8 397 65.7
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 1.1e-129 467.6 307 75.2
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.0e-123 446.8 319 68.7
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 5.0e-122 442.2 416 50.7
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 4.2e-121 439.1 285 68.4
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 6.1e-120 435.3 302 69.9
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.1e-108 397.9 339 52.5
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.0e-98 362.5 318 53.8
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 6.7e-95 352.1 277 65.0
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.2e-89 333.2 357 45.7
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 2.3e-71 273.9 137 89.8
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 6.6e-66 255.8 179 67.0
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 5.2e-55 219.5 109 89.9
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 3.4e-54 216.9 124 76.6
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.1e-52 211.8 119 79.0
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.7e-50 204.5 137 66.4
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 7.1e-44 182.6 127 66.9
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 5.1e-34 149.8 85 81.2
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.5e-33 148.3 85 80.0
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.2e-29 134.4 81 72.8
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 2.9e-29 134.0 101 63.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.5e-12 77.8 52 67.3
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 1.1e-09 68.9 117 37.6
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 5.7e-09 66.6 130 38.5


User provided reference genes

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