Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 2216.4 1146 100.0
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1780.0 1143 82.0
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1754.2 1141 80.4
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1662.9 1144 74.9
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1649.0 1136 74.4
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1627.5 1141 73.9
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1622.4 1142 73.8
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1622.1 1143 73.4
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1537.7 1141 70.1
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1515.7 1142 69.4
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1509.2 1136 69.1
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 0.0e+00 1424.1 1089 68.8
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1266.1 1158 58.5
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1250.0 1231 56.5
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1249.2 1159 57.9
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1241.1 1150 58.0
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1237.2 1157 57.6
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1228.8 1162 55.6
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1215.7 1152 56.1
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1191.4 1168 56.6
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1182.2 1164 55.2
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1171.0 1150 55.6
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1170.6 1153 54.0
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1166.4 1155 53.9
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1166.0 1154 55.5
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1159.1 1152 55.0
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1159.1 1153 54.1
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1157.9 1157 54.4
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1147.1 1151 53.8
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1129.0 1159 54.3
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1127.5 1151 52.6
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1121.7 1156 52.8
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1115.9 1163 51.8
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1112.8 1159 52.5
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1110.5 1127 53.1
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1107.4 1142 52.0
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1091.3 1161 51.2
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1090.1 1213 49.8
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1085.9 1161 51.3
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1085.9 1148 53.0
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1085.5 1162 50.7
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1083.6 1159 51.4
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 1.2e-310 1070.1 1153 49.6
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 6.6e-309 1064.3 1154 49.6
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 1.8e-303 1046.2 1152 49.0
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 7.0e-303 1044.3 1068 53.0
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 2.3e-298 1029.2 1117 50.0
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 9.8e-297 1023.8 1160 49.4
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.7e-296 1023.1 1153 49.9
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.9e-296 1022.3 1101 51.7
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 6.4e-288 994.6 1163 48.0
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 8.3e-288 994.2 1150 48.1
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 1.4e-287 993.4 1159 48.5
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 1.9e-287 993.0 1103 49.5
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 6.0e-286 988.0 1152 47.7
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 6.0e-286 988.0 1150 47.7
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 1.7e-285 986.5 1157 48.7
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 2.0e-281 973.0 1233 46.4
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 5.8e-281 971.5 1162 47.8
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 3.7e-280 968.8 1129 47.6
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.2e-279 965.7 1044 51.5
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 8.4e-272 941.0 1151 46.2
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 1.1e-271 940.6 1146 47.2
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.9e-271 939.9 1153 46.0
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 3.2e-271 939.1 1144 46.9
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 7.1e-271 937.9 1149 46.1
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 2.7e-270 936.0 1155 45.9
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 2.7e-270 936.0 1148 45.9
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 6.0e-270 934.9 1153 46.3
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 6.0e-270 934.9 1147 45.9
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 5.1e-269 931.8 1145 45.9
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 1.9e-268 929.9 1155 46.0
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 7.3e-268 927.9 1152 46.2
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 4.8e-267 925.2 1156 45.9
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.8e-266 923.3 1151 45.8
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 2.0e-265 919.8 1035 47.8
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 8.4e-264 914.4 1008 49.3
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.1e-263 911.4 1162 45.7
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 2.8e-259 899.4 1176 44.4
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.8e-258 896.7 1148 45.1
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 4.0e-258 895.6 1150 44.8
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 4.0e-258 895.6 1134 45.1
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.1e-253 878.6 951 50.3
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 3.4e-249 865.9 1102 46.0
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 3.3e-244 849.4 1146 43.6
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 6.9e-242 841.6 1074 45.6
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 7.4e-236 821.6 1134 42.6
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 8.5e-232 808.1 1150 41.6
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 2.0e-228 797.0 1069 43.2
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.5e-225 787.3 947 47.2
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.7e-224 783.9 1146 40.8
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.1e-223 781.2 1162 40.7
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 7.2e-223 778.5 1152 41.8
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 3.6e-214 749.6 901 45.5
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.5e-159 568.2 1067 35.3
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 5.6e-143 513.1 1209 30.0
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 1.1e-127 462.2 1213 29.2
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.9e-123 447.6 453 54.5
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 2.3e-120 438.0 649 39.9
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 1.0e-112 412.5 506 44.7
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.3e-110 405.6 696 37.8
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.8e-102 377.9 446 49.6
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.4e-101 374.8 532 41.2
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.3e-101 373.6 438 47.5
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 1.0e-99 369.4 1134 28.0
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.2e-98 364.0 337 54.3
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 3.5e-92 344.4 445 47.0
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 4.4e-79 300.8 236 62.7
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 5.2e-72 277.3 1289 25.2
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.7e-67 262.3 233 57.1
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 9.5e-66 256.5 197 67.5
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.1e-58 233.0 319 45.8
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 1.2e-57 229.6 290 47.2
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 6.2e-57 227.3 316 46.5
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 5.8e-55 220.7 154 67.5
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 1.2e-52 213.0 171 64.3
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 4.7e-49 201.1 180 56.7
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 7.1e-45 187.2 184 52.2
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 6.0e-44 184.1 123 74.0
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.4e-39 167.9 251 42.6
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 8.4e-38 163.7 157 51.6
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 1.3e-33 149.8 93 79.6
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.1e-32 145.2 117 64.1
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.2e-31 143.3 132 53.8
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 3.9e-27 128.3 147 47.6
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 3.9e-27 128.3 147 47.6
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.9e-26 125.9 122 51.6
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 2.5e-26 125.6 177 43.5
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.6e-26 124.4 195 38.5
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 3.7e-25 121.7 119 48.7
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 2.4e-24 119.0 97 67.0
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.0e-24 118.2 97 66.0
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.0e-24 118.2 97 66.0
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 5.8e-23 114.4 351 25.9
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.9e-21 109.4 120 50.0
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 3.2e-21 108.6 87 69.0
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 1.6e-20 106.3 65 81.5
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 4.6e-20 104.8 73 71.2
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 5.1e-19 101.3 80 61.2
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 1.5e-18 99.8 258 30.6
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.5e-15 89.7 166 33.1
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 7.6e-15 87.4 144 37.5
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 7.6e-15 87.4 63 57.1
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.3e-14 86.7 53 77.4
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 2.2e-14 85.9 127 37.8
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 3.8e-14 85.1 90 44.4
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.0e-11 77.0 92 42.4
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 9.7e-10 70.5 127 36.2
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.1e-08 67.0 69 52.2
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.1e-08 65.5 65 52.3


User provided reference genes

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