Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 0.0e+00 1138.3 574 100.0
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 3.6e-300 1034.2 573 90.9
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 7.4e-269 930.2 581 82.8
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 1.2e-234 816.6 467 88.4
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 1.1e-206 723.8 596 63.8
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 1.5e-205 719.9 583 66.0
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 7.8e-202 707.6 606 62.9
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.1e-200 703.7 601 63.6
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 2.8e-199 699.1 637 59.5
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 1.2e-194 683.7 506 69.0
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 3.9e-193 678.7 487 70.2
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 2.5e-192 676.0 497 69.0
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 7.3e-192 674.5 495 69.5
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 8.9e-190 667.5 549 63.4
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 2.7e-186 656.0 593 60.7
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 7.8e-186 654.4 559 61.7
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 2.3e-185 652.9 483 69.2
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 6.6e-185 651.4 552 62.7
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 1.6e-183 646.7 488 68.2
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 3.6e-183 645.6 500 66.0
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 2.2e-180 636.3 489 66.7
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.4e-179 633.6 484 67.6
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.4e-179 633.6 485 66.4
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 4.2e-179 632.1 485 66.2
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 1.1e-176 624.0 552 60.3
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 9.6e-176 620.9 497 65.0
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 8.1e-175 617.8 511 62.4
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 8.1e-175 617.8 488 64.3
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 1.4e-174 617.1 498 63.7
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 6.9e-174 614.8 538 60.4
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 1.7e-172 610.1 557 58.2
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 8.4e-172 607.8 535 60.2
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 1.4e-171 607.1 486 63.0
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.9e-171 606.7 528 59.3
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 1.9e-171 606.7 546 58.1
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.9e-171 606.7 556 58.8
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 9.3e-171 604.4 556 57.4
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 1.2e-170 604.0 490 63.7
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 2.7e-170 602.8 515 60.2
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 4.6e-170 602.1 500 62.6
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 4.6e-170 602.1 530 60.2
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 7.9e-170 601.3 548 58.6
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.8e-169 600.1 489 63.0
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 5.1e-169 598.6 560 57.3
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 4.3e-168 595.5 484 63.0
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 4.3e-168 595.5 479 63.3
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 5.6e-168 595.1 476 63.9
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 7.4e-168 594.7 474 65.0
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 7.4e-168 594.7 543 57.6
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 1.3e-167 594.0 479 63.0
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 8.1e-167 591.3 497 62.2
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 8.1e-167 591.3 486 63.2
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 1.1e-166 590.9 479 62.8
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 4.0e-166 589.0 484 62.4
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 6.9e-166 588.2 484 62.0
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 9.0e-166 587.8 487 63.0
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 1.2e-165 587.4 496 60.3
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 3.4e-165 585.9 508 58.5
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 3.4e-165 585.9 507 58.8
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 5.8e-165 585.1 505 58.8
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 1.0e-164 584.3 513 58.1
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 1.0e-164 584.3 513 58.1
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 3.8e-164 582.4 549 56.3
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 4.9e-164 582.0 548 55.8
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 6.5e-164 581.6 497 61.2
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 1.1e-163 580.9 482 63.5
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 5.5e-163 578.6 484 61.6
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 9.3e-163 577.8 545 58.7
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.2e-162 577.4 484 61.6
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.1e-162 576.6 503 58.4
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 1.8e-161 573.5 499 58.1
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 1.8e-161 573.5 517 59.0
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 1.8e-161 573.5 500 59.6
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 8.7e-161 571.2 504 57.7
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 1.5e-160 570.5 482 62.9
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 4.3e-160 568.9 509 58.3
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 1.3e-159 567.4 482 60.8
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 3.7e-159 565.8 587 52.5
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 4.8e-159 565.5 487 59.3
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 2.4e-158 563.1 587 53.5
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 2.6e-157 559.7 496 58.3
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 2.2e-156 556.6 587 53.0
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 5.0e-156 555.4 553 55.7
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 7.2e-155 551.6 504 57.7
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 4.6e-154 548.9 610 51.5
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 4.6e-154 548.9 520 57.3
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 6.7e-153 545.0 394 73.1
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 1.9e-152 543.5 483 58.2
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 4.5e-149 532.3 500 58.8
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 1.7e-148 530.4 445 62.7
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 2.9e-148 529.6 432 63.7
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 3.2e-147 526.2 485 57.3
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 7.9e-146 521.5 492 57.9
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 2.4e-142 510.0 529 55.2
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 3.1e-142 509.6 484 57.4
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 9.7e-136 488.0 502 53.6
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 8.0e-130 468.4 477 54.1
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.2e-128 464.5 394 62.4
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.5e-128 464.2 574 48.3
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 1.4e-126 457.6 437 59.3
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 5.3e-126 455.7 503 48.1
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 8.5e-124 448.4 485 53.8
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 5.5e-123 445.7 626 43.8
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 6.1e-122 442.2 383 60.3
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 1.9e-115 420.6 503 45.9
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.4e-110 404.4 287 72.8
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.1e-110 403.3 485 46.4
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 1.2e-109 401.4 310 67.7
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 4.5e-109 399.4 364 56.3
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 2.1e-98 364.0 569 39.9
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 6.2e-98 362.5 325 61.8
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 6.8e-97 359.0 342 57.3
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 8.9e-89 332.0 497 40.6
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 2.2e-87 327.4 269 63.6
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 2.9e-87 327.0 373 46.9
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 4.7e-82 309.7 285 60.0
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.2e-80 305.1 268 57.5
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 2.6e-80 303.9 554 35.4
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 7.3e-75 285.8 278 55.0
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 5.8e-72 276.2 304 51.3
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 5.8e-72 276.2 304 51.3
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 1.6e-69 268.1 196 69.9
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 3.0e-68 263.8 260 55.4
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 1.4e-65 255.0 238 52.5
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 9.0e-65 252.3 291 47.1
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.6e-64 250.8 240 54.6
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 2.1e-61 241.1 192 64.6
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 5.6e-59 233.0 192 59.9
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 6.2e-58 229.6 655 28.4
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.1e-51 208.8 179 60.9
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 4.3e-51 206.8 238 51.7
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 2.8e-50 204.1 155 67.7
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.6e-48 197.6 269 42.0
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 2.2e-47 194.5 119 79.8
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 6.5e-47 193.0 235 46.4
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.6e-45 188.3 246 45.5
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.1e-45 188.0 249 44.2
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 3.1e-41 174.1 131 59.5
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 7.9e-37 159.5 108 72.2
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 6.7e-36 156.4 158 58.9
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.7e-34 151.8 146 58.9
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 6.9e-33 146.4 126 62.7
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.0e-32 144.8 246 39.4
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 2.6e-32 144.4 185 41.1
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.8e-31 140.6 240 36.2
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 5.3e-25 120.2 151 49.7
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 2.3e-20 104.8 255 32.2
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 3.0e-20 104.4 209 30.1
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 1.1e-19 102.4 92 47.8
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 2.0e-16 91.7 73 64.4
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 7.7e-16 89.7 72 58.3
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 1.9e-14 85.1 52 80.8
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 4.2e-14 84.0 63 65.1
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 4.7e-13 80.5 69 55.1
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 1.0e-12 79.3 53 67.9
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.4e-12 79.0 91 49.5
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.2e-11 75.9 85 48.2
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 1.5e-11 75.5 59 55.9
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.5e-11 75.5 82 43.9
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 7.5e-11 73.2 51 66.7
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 2.2e-10 71.6 56 57.1
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 4.8e-10 70.5 122 32.8
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 1.4e-09 68.9 51 70.6
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 1.4e-09 68.9 51 62.7
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 1.8e-09 68.6 48 72.9
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 7.0e-09 66.6 50 68.0
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 1.2e-08 65.9 50 52.0
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 2.0e-08 65.1 50 52.0
arahy.Tifrunner.gnm1.ann1.6Z8QT9 Arachis hypogaea HOM05D001329 ORTHO05D010271 5.9e-08 63.5 51 60.8
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-06 59.3 70 41.4


User provided reference genes

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