Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.7e-191 672.5 342 100.0
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.2e-96 357.5 300 70.3
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.2e-94 349.4 300 69.3
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.7e-91 338.6 272 69.9
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.1e-89 332.8 297 65.0
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 6.6e-55 218.8 307 48.9
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.0e-51 207.2 297 47.5
VMungo1309G0044 Vigna mungo HOM05D014262 ORTHO05D018084 4.6e-40 169.5 315 41.6
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.2e-35 154.8 387 33.3
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 6.4e-34 149.1 387 32.6
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 2.4e-33 147.1 387 32.3
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 2.1e-32 144.1 295 34.9
VMungo0029G0001 Vigna mungo HOM05D014262 ORTHO05D018084 8.6e-31 138.7 228 45.2
VMungo1309G1023 Vigna mungo HOM05D014262 ORTHO05D018084 8.6e-31 138.7 224 44.2
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 5.8e-27 125.9 294 34.0
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 2.9e-26 123.6 347 31.4
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 9.2e-25 118.6 373 29.0
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 2.3e-23 114.0 362 29.6
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 8.9e-20 102.1 182 36.8
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.2e-19 101.7 295 31.2
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 4.4e-19 99.8 214 34.1
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 4.4e-19 99.8 299 30.1
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 7.6e-19 99.0 299 30.8
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 2.9e-18 97.1 197 35.5
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 4.9e-18 96.3 340 29.4
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 8.4e-18 95.5 289 31.1
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.4e-17 94.7 352 29.0
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 2.4e-17 94.0 107 44.9
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 3.2e-17 93.6 129 40.3
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 4.2e-17 93.2 107 43.0
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.2e-17 93.2 218 33.5
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 9.2e-17 92.0 163 36.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 9.2e-17 92.0 125 40.8
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 9.2e-17 92.0 156 37.8
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 9.2e-17 92.0 304 28.6
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 1.6e-16 91.3 288 29.5
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 2.7e-16 90.5 283 30.0
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.7e-16 90.5 293 31.1
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 4.6e-16 89.7 314 29.0
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 7.8e-16 89.0 274 29.2
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 7.8e-16 89.0 335 27.5
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.0e-15 88.6 296 27.0
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.7e-15 87.8 227 32.2
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 2.3e-15 87.4 257 30.7
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 3.0e-15 87.0 303 28.1
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 3.9e-15 86.7 216 32.9
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 3.9e-15 86.7 220 30.9
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.1e-15 86.3 308 29.9
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 5.1e-15 86.3 107 42.1
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 6.6e-15 85.9 296 28.0
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.1e-14 85.1 299 28.4
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 1.1e-14 85.1 175 33.1
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.1e-14 85.1 287 26.5
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.9e-14 84.3 110 41.8
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 2.5e-14 84.0 107 41.1
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.5e-14 84.0 277 27.1
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 4.3e-14 83.2 310 25.8
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 4.3e-14 83.2 270 27.0
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 4.3e-14 83.2 331 24.8
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 4.3e-14 83.2 290 27.9
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 4.3e-14 83.2 174 32.8
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 7.3e-14 82.4 292 28.8
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 7.3e-14 82.4 99 41.4
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 9.6e-14 82.0 276 27.9
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 1.2e-13 81.6 314 27.7
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.6e-13 81.3 229 27.9
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.6e-13 81.3 270 27.4
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.6e-13 81.3 110 40.0
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 2.1e-13 80.9 291 29.9
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 2.1e-13 80.9 298 29.5
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 2.8e-13 80.5 283 30.7
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.8e-13 80.5 96 45.8
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 4.7e-13 79.7 105 41.0
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 4.7e-13 79.7 240 30.0
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.7e-13 79.7 215 31.2
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 4.7e-13 79.7 117 39.3
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 6.2e-13 79.3 301 28.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 8.1e-13 79.0 350 26.0
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.1e-12 78.6 305 27.5
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.4e-12 78.2 363 25.1
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.4e-12 78.2 217 29.0
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.4e-12 77.4 201 29.9
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 3.1e-12 77.0 293 25.9
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.0e-12 76.6 103 37.9
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.3e-12 76.3 302 27.2
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 5.3e-12 76.3 305 28.5
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.5e-11 74.7 158 32.3
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 1.5e-11 74.7 310 26.1
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 2.0e-11 74.3 99 40.4
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 3.4e-11 73.6 261 26.8
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 3.4e-11 73.6 304 28.0
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 4.4e-11 73.2 315 29.2
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.4e-11 73.2 327 25.4
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 5.8e-11 72.8 96 36.5
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.8e-11 72.8 314 27.1
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.8e-11 72.8 314 27.1
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 7.6e-11 72.4 286 26.9
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 7.6e-11 72.4 284 26.4
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 7.6e-11 72.4 135 34.8
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 9.9e-11 72.0 110 36.4
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.3e-10 71.6 300 28.0
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 1.3e-10 71.6 291 30.2
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.3e-10 71.6 289 27.3
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.3e-10 71.6 323 28.2
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.7e-10 71.2 353 24.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 2.2e-10 70.9 239 29.3
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.8e-10 70.1 305 25.9
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 4.9e-10 69.7 349 25.8
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 6.4e-10 69.3 282 29.1
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 8.4e-10 68.9 332 24.4
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 8.4e-10 68.9 105 37.1
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.1e-09 68.6 108 36.1
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 1.9e-09 67.8 283 26.5
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.9e-09 67.8 117 33.3
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.9e-09 67.8 344 25.3
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.2e-09 67.0 313 26.8
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 4.2e-09 66.6 96 40.6
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.2e-09 66.6 103 33.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.2e-09 66.6 116 33.6
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 4.2e-09 66.6 145 31.0
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 5.4e-09 66.2 218 31.7
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.1e-09 65.9 272 25.0
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 9.3e-09 65.5 310 26.5
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 9.3e-09 65.5 290 24.1
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 9.3e-09 65.5 63 52.4
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.2e-08 65.1 346 27.7
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.6e-08 64.7 305 26.6
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.6e-08 64.7 309 27.2
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.6e-08 64.7 237 27.8
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.1e-08 64.3 292 28.1
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 2.7e-08 63.9 177 26.0
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.6e-08 63.2 343 24.5
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.0e-07 62.0 281 24.6
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.3e-07 61.6 127 33.1
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 1.3e-07 61.6 305 24.9
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.3e-07 61.6 331 26.9
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.3e-07 60.8 104 38.5
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 3.0e-07 60.5 338 25.4
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 3.0e-07 60.5 284 26.4
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 3.9e-07 60.1 288 27.4
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 5.1e-07 59.7 213 28.6
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 3.3e-06 57.0 296 23.6
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 3.3e-06 57.0 79 39.2
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 3.3e-06 57.0 96 35.4
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 5.6e-06 56.2 327 24.5
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 9.6e-06 55.5 248 25.0
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 9.6e-06 55.5 266 27.8


User provided reference genes

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