Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 7.8e-71 270.4 140 100.0
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 3.1e-59 231.9 139 84.2
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 5.1e-54 214.5 140 80.7
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 1.1e-53 213.4 135 83.0
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.6e-44 183.0 140 65.7
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 1.2e-42 176.8 136 70.6
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.6e-42 175.6 139 69.8
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 2.9e-41 172.2 140 62.9
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 6.4e-41 171.0 130 68.5
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 8.4e-41 170.6 140 62.9
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 1.4e-40 169.9 131 67.9
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 2.4e-40 169.1 133 63.2
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 3.2e-40 168.7 135 66.7
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 1.2e-39 166.8 129 63.6
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 3.9e-38 161.8 140 61.4
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.9e-37 159.5 140 62.1
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.5e-37 159.1 117 66.7
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.3e-37 158.7 117 66.7
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 3.3e-37 158.7 117 66.7
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 9.6e-37 157.1 141 58.9
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 9.6e-37 157.1 132 59.1
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.3e-36 156.8 117 65.8
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.6e-36 156.4 117 65.8
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.6e-36 156.4 117 65.8
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 2.1e-36 156.0 140 59.3
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 4.8e-36 154.8 142 58.5
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 1.1e-35 153.7 120 60.8
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.4e-35 153.3 139 56.8
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 9.0e-35 150.6 140 55.7
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.4e-34 148.7 134 61.9
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.7e-33 146.4 130 60.0
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 6.4e-33 144.4 133 58.6
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 8.4e-33 144.1 136 60.3
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 8.4e-33 144.1 132 56.1
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 1.4e-32 143.3 112 67.9
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.4e-32 143.3 134 55.2
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.2e-32 141.7 130 56.2
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.2e-32 141.7 130 55.4
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 4.2e-32 141.7 130 55.4
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 5.4e-32 141.4 123 57.7
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 9.3e-32 140.6 128 57.0
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.1e-31 139.4 126 56.3
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.7e-31 139.0 141 54.6
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 6.0e-31 137.9 143 52.4
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.3e-30 136.7 141 52.5
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 1.3e-30 136.7 128 56.2
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.8e-30 136.3 141 52.5
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.8e-30 136.3 134 56.7
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 6.7e-30 134.4 123 55.3
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 6.7e-30 134.4 133 56.4
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 8.7e-30 134.0 124 53.2
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 3.3e-29 132.1 126 52.4
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 5.6e-29 131.3 139 50.4
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 5.6e-29 131.3 134 51.5
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 9.6e-29 130.6 143 50.3
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.3e-28 130.2 133 56.4
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 8.1e-28 127.5 141 53.9
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 2.4e-27 125.9 130 53.1
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 6.9e-27 124.4 144 49.3
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 6.9e-27 124.4 128 52.3
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 5.8e-26 121.3 141 51.8
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.3e-25 120.2 123 49.6
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 1.7e-25 119.8 138 44.9
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 3.8e-25 118.6 123 52.0
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 3.8e-25 118.6 123 52.0
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 3.8e-25 118.6 121 48.8
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.4e-25 117.9 134 53.7
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 4.2e-24 115.2 106 56.6
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 5.5e-24 114.8 101 56.4
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 9.3e-24 114.0 126 49.2
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.2e-23 113.6 126 48.4
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 2.1e-23 112.8 139 47.5
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 1.0e-22 110.5 122 48.4
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.8e-22 109.8 124 52.4
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.8e-22 109.8 149 44.3
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.3e-22 109.4 129 51.9
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 2.3e-22 109.4 133 45.9
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 3.0e-22 109.0 116 51.7
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.9e-22 108.6 141 49.6
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 5.1e-22 108.2 149 44.3
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 6.7e-22 107.8 125 46.4
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 2.5e-21 105.9 128 46.9
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 3.3e-21 105.5 120 43.3
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.3e-21 105.5 130 48.5
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 7.4e-21 104.4 127 47.2
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.3e-20 103.6 128 45.3
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.6e-20 103.2 124 48.4
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 2.1e-20 102.8 128 45.3
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 8.1e-20 100.9 131 44.3
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 8.1e-20 100.9 106 51.9
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 4.0e-19 98.6 121 45.5
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 5.3e-19 98.2 124 46.8
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.5e-18 96.7 121 44.6
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.6e-18 95.9 117 48.7
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.6e-18 95.9 117 48.7
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 3.4e-18 95.5 103 49.5
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 3.4e-18 95.5 103 49.5
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 4.5e-18 95.1 141 43.3
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 5.8e-18 94.7 130 41.5
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 7.6e-18 94.4 107 49.5
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 1.3e-17 93.6 115 47.8
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 3.8e-17 92.0 140 41.4
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 3.8e-17 92.0 103 48.5
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 6.5e-17 91.3 125 43.2
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.1e-16 90.5 115 45.2
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.9e-16 89.7 112 45.5
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 2.5e-16 89.4 104 48.1
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 2.5e-16 89.4 104 50.0
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 4.2e-16 88.6 105 45.7
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 7.1e-16 87.8 115 44.3
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 9.3e-16 87.4 115 44.3
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 9.3e-16 87.4 115 44.3
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 1.2e-15 87.0 79 50.6
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 2.7e-15 85.9 103 46.6
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 3.5e-15 85.5 119 47.1
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 3.5e-15 85.5 105 46.7
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 3.5e-15 85.5 105 46.7
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 4.6e-15 85.1 105 45.7
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 6.0e-15 84.7 103 45.6
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 3.9e-14 82.0 123 42.3
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 5.7e-13 78.2 122 39.3
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 3.7e-12 75.5 111 40.5
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 2.4e-11 72.8 121 35.5
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 2.4e-11 72.8 121 35.5
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.4e-11 72.8 129 36.4
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 2.4e-11 72.8 125 37.6
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 5.3e-11 71.6 123 36.6
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 5.3e-11 71.6 107 44.9
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 7.6e-10 67.8 121 33.1
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 1.7e-09 66.6 123 33.3
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 2.2e-09 66.2 122 41.0
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 2.9e-09 65.9 133 36.8
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 6.5e-09 64.7 136 35.3
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 6.5e-09 64.7 105 41.0
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 1.1e-08 63.9 114 32.5
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 1.9e-08 63.2 135 35.6
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 7.2e-08 61.2 127 31.5
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 1.0e-06 57.4 134 34.3
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 1.0e-06 57.4 130 32.3
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 3.0e-06 55.8 134 33.6
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 3.9e-06 55.5 134 32.8
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 6.7e-06 54.7 140 33.6


User provided reference genes

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