Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 0.0e+00 1119.0 579 100.0
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 6.7e-302 1040.0 579 94.1
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 2.2e-289 998.4 579 88.9
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 2.7e-263 911.8 561 84.7
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 1.3e-252 876.3 561 82.2
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 9.2e-251 870.2 561 81.5
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.5e-248 862.8 561 81.3
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 3.6e-239 831.6 499 87.2
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 1.8e-238 829.3 564 76.8
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.2e-226 790.0 564 73.8
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 1.2e-223 780.0 564 72.9
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 1.2e-221 773.5 560 73.0
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 9.9e-221 770.4 566 71.0
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 2.1e-218 762.7 562 70.8
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 4.6e-218 761.5 569 70.8
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 1.1e-216 756.9 480 82.3
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.6e-213 745.7 567 70.4
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 3.4e-213 745.3 563 70.7
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.3e-212 743.4 567 70.2
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 1.4e-211 740.0 561 69.7
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.7e-209 733.0 565 68.3
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 7.3e-208 727.6 561 68.6
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 7.3e-208 727.6 570 68.2
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 9.6e-208 727.2 568 67.4
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.8e-207 725.7 575 66.8
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.8e-207 724.9 575 66.6
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.1e-206 723.8 574 68.3
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 1.8e-206 723.0 562 66.4
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 4.0e-206 721.8 564 66.8
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.9e-206 721.1 572 67.0
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 9.0e-206 720.7 568 66.4
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 2.6e-205 719.2 578 68.2
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 2.6e-205 719.2 565 67.6
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.9e-205 717.2 575 66.1
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 8.4e-204 714.1 562 66.7
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.1e-203 713.8 568 66.9
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.4e-203 713.4 562 65.5
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 4.2e-203 711.8 572 67.8
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 9.3e-203 710.7 568 66.0
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 2.1e-202 709.5 564 66.7
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.7e-202 709.1 562 65.5
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 3.7e-199 698.7 562 65.7
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 4.0e-198 695.3 573 64.6
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 6.5e-196 688.0 565 65.3
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 6.5e-196 688.0 561 63.1
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 8.4e-196 687.6 551 67.2
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 8.4e-196 687.6 605 63.6
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 8.4e-196 687.6 580 64.5
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 7.1e-195 684.5 577 64.0
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 1.6e-194 683.3 573 64.7
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 6.0e-194 681.4 560 64.6
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 6.0e-194 681.4 519 69.0
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 2.3e-193 679.5 563 64.7
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 6.7e-193 677.9 566 64.0
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.9e-192 676.4 574 63.1
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 1.9e-192 676.4 573 63.2
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 4.3e-192 675.2 566 64.1
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 1.4e-190 670.2 567 63.1
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 1.8e-190 669.8 572 62.8
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 5.8e-189 664.8 564 61.7
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.3e-188 663.7 566 62.7
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.7e-188 663.3 562 63.0
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 2.2e-188 662.9 570 62.5
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 3.8e-188 662.1 566 62.0
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 8.4e-188 661.0 565 61.8
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 8.4e-188 661.0 564 62.9
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 3.2e-187 659.1 499 66.9
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 4.2e-187 658.7 585 61.4
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 5.5e-187 658.3 568 61.1
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 5.5e-187 658.3 568 61.1
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 2.1e-186 656.4 568 60.7
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 1.0e-185 654.1 568 60.7
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 2.3e-185 652.9 568 60.6
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 2.3e-185 652.9 505 66.3
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 8.7e-185 651.0 589 59.3
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 3.3e-184 649.0 565 61.2
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 3.3e-184 649.0 568 60.9
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 5.7e-184 648.3 572 60.8
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.6e-183 646.7 578 60.0
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 1.6e-183 646.7 565 60.4
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.6e-183 646.7 564 60.6
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 6.3e-183 644.8 556 62.6
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 2.4e-182 642.9 643 58.0
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 2.0e-181 639.8 598 59.5
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 2.5e-179 632.9 562 61.4
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.0e-177 627.5 565 60.4
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 3.9e-177 625.5 565 60.2
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 8.8e-177 624.4 562 60.9
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 2.5e-176 622.9 566 60.2
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 1.2e-173 614.0 599 56.8
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 3.8e-172 609.0 564 60.3
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 3.0e-169 599.4 578 57.8
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 2.6e-168 596.3 476 66.0
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 1.2e-165 587.4 464 65.9
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 1.9e-163 580.1 503 61.4
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 1.4e-161 573.9 504 62.1
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 3.0e-161 572.8 562 57.5
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 4.1e-158 562.4 506 59.1
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 6.8e-153 545.0 549 56.5
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.3e-148 530.8 569 53.4
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.7e-148 530.4 563 56.5
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 9.2e-142 508.1 571 50.3
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 7.7e-141 505.0 536 51.9
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.0e-140 504.6 349 72.2
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.1e-139 501.1 512 52.9
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.9e-139 500.4 349 73.1
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.8e-137 493.8 579 52.0
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 2.4e-134 483.4 469 56.3
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.5e-131 474.2 340 70.6
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 9.8e-128 461.5 403 62.3
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 3.7e-127 459.5 519 52.2
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 5.1e-116 422.5 484 49.6
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.1e-115 421.4 365 61.4
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.8e-112 409.1 243 86.4
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 5.8e-112 409.1 244 83.2
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 5.8e-112 409.1 244 83.2
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.8e-105 387.5 411 53.5
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 3.8e-103 379.8 233 79.8
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 9.9e-96 355.1 284 63.7
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 1.7e-95 354.4 418 50.0
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 4.9e-95 352.8 430 50.2
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.1e-93 347.4 192 90.6
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 1.6e-90 337.8 407 49.9
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 4.5e-88 329.7 304 55.9
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.5e-86 322.8 342 54.1
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 9.3e-86 322.0 391 49.6
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 1.0e-84 318.5 513 40.0
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 9.6e-83 312.0 555 36.8
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 2.6e-80 303.9 234 72.2
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 1.9e-78 297.7 159 91.2
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 3.3e-75 287.0 378 47.6
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 5.0e-63 246.5 143 84.6
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.2e-62 243.8 143 87.4
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.1e-61 239.6 143 85.3
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 2.6e-59 234.2 198 65.7
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 7.4e-59 232.6 461 37.7
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 1.3e-58 231.9 134 88.8
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.4e-56 223.8 128 88.3
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-47 193.0 555 29.9
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 9.4e-38 162.5 440 27.5
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.6e-35 154.5 88 87.5
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.1e-33 146.0 91 80.2
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.8e-29 134.4 160 49.4
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 6.3e-26 123.2 203 38.9
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 7.0e-25 119.8 173 43.9
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 5.9e-24 116.7 267 33.3
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 2.5e-22 111.3 132 50.0
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 4.0e-20 104.0 254 29.9
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.2e-19 102.4 122 49.2
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 5.7e-19 100.1 258 31.0
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.4e-17 94.7 52 88.5
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 2.0e-16 91.7 81 64.2
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 5.0e-15 87.0 45 88.9
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 2.3e-07 61.6 201 27.9
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 1.5e-06 58.9 32 93.8


User provided reference genes

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