Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 2293.5 1212 100.0
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 2069.3 1213 91.1
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 2003.4 1175 88.1
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1771.5 1166 79.0
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1737.2 1170 77.6
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1715.3 1156 77.9
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1687.9 1167 75.7
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1682.5 1173 75.4
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1682.2 1170 75.5
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1678.7 1173 75.1
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1636.7 1192 73.4
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1367.1 1190 63.3
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1360.5 1189 62.8
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1352.0 1199 62.3
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1350.5 1186 62.6
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1347.4 1177 63.2
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1335.1 1192 60.4
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1328.9 1179 62.2
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1323.5 1173 61.6
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1318.9 1173 61.4
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1318.5 1171 61.1
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1303.9 1169 61.2
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1301.6 1176 60.5
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1297.7 1186 59.7
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1295.4 1186 59.6
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1291.2 1197 60.3
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1283.9 1186 59.9
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1280.8 1178 60.1
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1272.3 1186 58.9
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1271.5 1174 59.7
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1269.2 1177 59.9
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1266.9 1248 57.6
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1262.3 1192 58.1
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1258.8 1238 57.3
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1252.3 1194 58.5
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1246.5 1187 58.0
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1243.0 1183 58.0
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1239.2 1189 57.1
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1221.8 741 86.6
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1192.6 1115 59.0
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1192.2 1240 54.7
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1191.0 1185 57.4
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1188.3 1187 56.4
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1187.2 1181 57.1
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1181.8 1179 57.4
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1160.2 1185 55.9
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1151.3 1188 55.7
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1142.9 1210 53.5
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1142.1 1089 59.4
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 0.0e+00 1140.9 1175 54.9
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 0.0e+00 1134.0 1210 54.5
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1127.1 1187 53.9
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1125.2 1187 54.3
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 0.0e+00 1123.2 1189 54.8
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1118.6 1229 52.8
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1112.8 1183 53.4
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1107.8 1252 51.7
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1100.1 1185 52.9
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 0.0e+00 1093.2 1201 53.0
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1077.4 1193 52.0
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 1.1e-309 1067.0 1202 51.3
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 2.5e-306 1055.8 1178 52.5
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 2.7e-305 1052.4 1024 58.0
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 3.9e-304 1048.5 1220 51.3
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 6.7e-304 1047.7 1172 51.0
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 1.1e-303 1047.0 1181 51.0
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 1.8e-296 1023.1 1190 50.6
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 2.7e-289 999.2 1178 49.2
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 1.0e-288 997.3 1253 47.0
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 6.3e-286 988.0 1187 49.9
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 5.9e-284 981.5 1200 49.8
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 8.5e-283 977.6 1208 50.7
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 1.1e-282 977.2 1180 48.6
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 1.7e-278 963.4 1197 47.8
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 3.1e-277 959.1 1195 48.8
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 2.7e-276 956.1 1073 53.7
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 3.7e-270 935.6 1135 48.4
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 4.5e-268 928.7 1177 46.0
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 6.1e-265 918.3 1118 50.1
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 4.3e-258 895.6 1033 52.6
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 9.5e-258 894.4 760 65.1
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 1.4e-256 890.6 1245 45.3
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 7.1e-237 825.1 1174 43.5
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 9.2e-237 824.7 1171 43.8
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 1.6e-225 787.3 728 61.5
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 8.4e-214 748.4 1061 43.6
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 8.2e-209 731.9 1165 41.1
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 3.5e-204 716.5 979 44.9
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 1.5e-191 674.5 399 85.5
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 4.7e-164 583.2 1209 36.6
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 5.9e-159 566.2 1171 34.6
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 8.3e-153 545.8 617 49.8
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 6.6e-142 509.6 1125 35.4
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 4.3e-141 506.9 1235 33.9
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 3.9e-126 457.2 615 46.2
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 6.6e-110 403.3 394 55.6
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 1.5e-93 349.0 444 50.0
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 5.1e-86 323.9 517 40.8
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 1.2e-71 276.2 269 58.7
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 1.5e-66 259.2 1301 27.4
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 2.8e-60 238.4 397 39.3
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 8.2e-60 236.9 263 52.9
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.1e-43 181.8 211 51.2
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 7.3e-32 144.1 89 75.3
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 2.1e-31 142.5 131 55.7
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 4.7e-31 141.4 122 57.4
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 4.0e-30 138.3 86 73.3
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 1.2e-29 136.7 134 53.7
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 1.7e-28 132.9 74 78.4
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.2e-27 128.6 110 56.4
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 1.3e-25 123.2 125 49.6
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 6.6e-25 120.9 110 63.6
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 4.1e-19 101.7 80 60.0
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 3.6e-07 62.0 74 41.9
TAR629G2211 Trochodendron aralioides HOM05D002089 ORTHO05D022294 3.6e-07 62.0 82 45.1
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 3.1e-06 58.9 145 26.9


User provided reference genes

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