Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 7.2e-156 553.9 286 100.0
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 6.6e-125 451.1 287 82.6
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 9.2e-119 430.6 286 79.7
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.0e-110 402.9 286 74.8
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.1e-108 397.1 286 75.5
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.6e-94 350.1 289 65.4
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 4.0e-90 335.5 289 64.7
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 2.9e-88 329.3 290 63.8
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.0e-85 320.9 289 63.0
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 6.0e-78 295.0 278 60.1
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 3.9e-77 292.4 271 59.8
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.3e-75 287.3 243 62.6
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 9.9e-73 277.7 288 55.9
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.0e-69 267.7 287 54.4
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.6e-65 253.1 289 48.4
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 1.9e-63 246.9 290 48.6
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 2.7e-62 243.0 169 70.4
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 3.5e-62 242.7 289 48.4
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 7.9e-62 241.5 296 48.3
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 3.9e-61 239.2 290 48.6
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.5e-60 236.5 292 45.9
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 2.5e-60 236.5 296 47.6
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 5.7e-60 235.3 297 48.5
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 2.8e-59 233.0 218 58.7
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 4.8e-59 232.3 293 48.5
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.1e-58 229.6 292 46.9
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 1.2e-57 227.6 315 44.1
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 2.0e-57 226.9 290 48.3
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.1e-55 221.1 296 43.6
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.5e-55 219.9 309 43.7
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 9.3e-55 218.0 205 57.1
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.2e-54 217.6 283 45.2
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.1e-54 216.9 292 46.2
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 1.5e-52 210.7 228 53.9
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 1.5e-52 210.7 291 47.8
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.6e-51 207.2 309 44.3
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 6.3e-51 205.3 294 42.2
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 8.2e-51 204.9 394 36.5
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.1e-50 204.5 282 47.2
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.8e-50 203.8 282 46.5
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 6.9e-50 201.8 282 46.5
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 1.5e-49 200.7 295 42.4
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.4e-49 199.5 289 40.5
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 3.4e-49 199.5 306 39.2
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.3e-48 197.6 293 42.0
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.3e-48 197.6 284 41.2
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 2.2e-48 196.8 311 44.7
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.4e-47 194.1 290 42.1
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 4.2e-47 192.6 305 41.3
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 5.5e-47 192.2 274 43.4
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 5.5e-47 192.2 256 46.1
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 9.4e-47 191.4 312 41.0
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.2e-46 191.0 299 42.8
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 1.6e-46 190.7 270 41.1
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 2.7e-46 189.9 367 38.1
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 3.6e-46 189.5 337 38.3
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 6.1e-46 188.7 290 40.0
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.4e-45 187.6 299 42.5
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.8e-45 187.2 288 39.2
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 8.8e-45 184.9 247 44.5
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 2.6e-44 183.3 295 41.7
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 2.6e-44 183.3 288 40.3
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 7.4e-44 181.8 392 36.5
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.3e-43 181.0 333 36.6
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.3e-43 181.0 289 41.5
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.2e-43 180.3 338 37.0
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 2.2e-43 180.3 320 37.5
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.8e-43 179.9 344 37.5
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-42 177.9 279 37.6
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.1e-42 177.9 221 48.0
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.4e-42 177.6 165 57.6
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 1.8e-42 177.2 391 35.8
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 4.1e-42 176.0 288 39.9
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 5.3e-42 175.6 279 38.7
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 9.1e-42 174.9 287 40.1
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.0e-41 173.7 273 38.8
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.6e-41 173.3 338 36.7
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 3.4e-41 172.9 288 38.2
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 7.7e-41 171.8 342 35.1
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.7e-41 171.8 297 36.4
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 7.7e-41 171.8 289 38.1
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 1.3e-40 171.0 324 37.0
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.3e-40 171.0 337 35.6
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 2.2e-40 170.2 271 39.1
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.2e-40 170.2 285 42.1
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 2.9e-40 169.9 369 34.4
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 3.8e-40 169.5 257 43.6
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 3.8e-40 169.5 374 35.3
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 5.0e-40 169.1 319 37.9
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 6.5e-40 168.7 298 40.6
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 8.5e-40 168.3 328 35.7
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 1.1e-39 167.9 291 41.2
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 1.9e-39 167.2 258 41.9
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.5e-39 166.8 369 33.3
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 4.2e-39 166.0 297 40.1
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 7.2e-39 165.2 367 33.0
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.2e-38 164.5 258 43.4
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.2e-38 164.5 258 43.4
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.1e-38 163.7 281 37.4
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 2.1e-38 163.7 316 36.7
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.0e-37 161.4 291 35.4
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.4e-37 161.0 168 54.2
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.1e-36 157.9 168 53.0
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.5e-36 157.5 257 43.2
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.5e-36 157.5 257 43.2
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 2.0e-36 157.1 341 33.1
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 2.0e-36 157.1 392 30.9
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 2.6e-36 156.8 321 36.1
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 2.6e-36 156.8 331 34.4
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.6e-36 156.8 172 47.1
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.3e-36 156.4 282 38.7
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 5.7e-36 155.6 252 38.9
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 7.4e-36 155.2 299 37.5
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.3e-35 154.5 332 33.1
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.3e-35 154.5 294 37.1
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 2.4e-34 150.2 330 33.6
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.6e-33 147.5 255 38.8
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.6e-33 147.5 233 39.1
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.6e-33 147.5 154 51.9
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 4.5e-33 146.0 237 39.2
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 2.9e-32 143.3 256 36.3
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 2.9e-32 143.3 212 43.4
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 2.9e-32 143.3 212 43.4
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 2.9e-32 143.3 341 31.4
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.8e-32 142.9 280 37.1
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 8.5e-32 141.7 219 42.9
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 2.5e-31 140.2 273 37.7
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.2e-30 137.9 218 43.6
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.2e-30 137.9 286 34.6
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 4.7e-30 136.0 269 38.3
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 8.0e-30 135.2 259 37.8
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 1.8e-29 134.0 233 36.9
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.2e-28 131.3 294 36.7
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.5e-28 131.0 255 37.3
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.6e-28 130.2 178 40.4
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 5.7e-28 129.0 284 34.9
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 9.7e-28 128.3 284 32.7
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.1e-26 124.8 332 31.3
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 4.5e-25 119.4 97 55.7
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 1.0e-24 118.2 227 36.1
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 6.5e-24 115.5 167 43.1
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.1e-23 114.8 281 32.4
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.9e-23 114.0 354 29.4
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 2.1e-22 110.5 256 32.8
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.7e-22 110.2 406 28.8
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 8.8e-21 105.1 243 30.9
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 5.7e-20 102.4 278 28.8
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 1.7e-19 100.9 139 45.3
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.0e-18 95.5 119 43.7
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.7e-17 93.6 94 50.0
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 5.9e-17 92.4 265 28.3
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.0e-16 89.4 88 46.6
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.6e-14 84.3 142 40.1
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.4e-12 76.6 102 42.2
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 9.8e-12 75.1 323 26.3
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 4.1e-10 69.7 165 33.9
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.8e-08 63.2 229 27.5
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 8.6e-08 62.0 136 33.8
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 4.3e-07 59.7 109 34.9
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 7.3e-07 58.9 133 30.8
arahy.Tifrunner.gnm1.ann1.TSYD5C Arachis hypogaea HOM05D004296 ORTHO05D005045 2.1e-06 57.4 54 55.6
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 4.7e-06 56.2 55 45.5


User provided reference genes

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