Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.3e-85 319.7 163 100.0
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.1e-79 300.1 160 93.1
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 3.1e-79 298.5 159 93.1
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 4.6e-75 284.6 158 88.6
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 5.1e-74 281.2 158 88.0
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 6.7e-74 280.8 145 97.2
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.6e-72 276.2 160 83.1
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.8e-72 275.4 162 81.5
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 4.8e-72 274.6 162 82.1
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 4.8e-72 274.6 160 85.0
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 4.8e-72 274.6 162 82.7
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 6.3e-72 274.2 160 83.8
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 8.2e-72 273.9 162 81.5
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 8.2e-72 273.9 159 85.5
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.1e-71 273.5 161 82.6
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.8e-71 272.7 160 81.9
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 2.4e-71 272.3 160 84.4
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 3.1e-71 271.9 162 79.6
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 3.1e-71 271.9 160 83.1
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 4.1e-71 271.6 159 81.1
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 6.9e-71 270.8 162 80.9
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 9.0e-71 270.4 161 79.5
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.2e-70 270.0 159 81.1
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 2.0e-70 269.2 162 80.9
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 2.0e-70 269.2 162 80.9
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.0e-70 269.2 162 80.9
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 2.6e-70 268.9 162 80.9
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.6e-70 268.9 161 81.4
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.6e-70 268.9 161 81.4
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 2.6e-70 268.9 162 80.2
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 2.6e-70 268.9 162 80.2
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.4e-70 268.5 159 80.5
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 4.5e-70 268.1 162 80.2
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.7e-70 267.3 162 80.2
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 7.7e-70 267.3 162 79.0
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 7.7e-70 267.3 162 80.2
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 1.3e-69 266.5 162 80.9
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.7e-69 266.2 162 79.6
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.7e-69 266.2 162 75.9
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 2.2e-69 265.8 159 81.1
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 2.2e-69 265.8 159 80.5
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.2e-69 265.8 162 79.6
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.2e-69 265.8 162 79.6
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 2.2e-69 265.8 162 78.4
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 2.9e-69 265.4 159 79.9
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 2.9e-69 265.4 158 80.4
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 2.9e-69 265.4 162 79.0
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.9e-69 265.4 159 81.8
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.8e-69 265.0 159 80.5
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 5.0e-69 264.6 162 79.0
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 6.5e-69 264.2 159 81.1
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 6.5e-69 264.2 161 79.5
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.5e-69 264.2 162 78.4
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 8.5e-69 263.8 162 78.4
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.1e-68 263.5 160 78.8
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 1.4e-68 263.1 159 79.9
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.4e-68 263.1 162 77.8
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 1.4e-68 263.1 162 78.4
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.4e-68 263.1 159 79.2
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.4e-68 263.1 159 79.2
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-68 263.1 162 75.3
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 2.5e-68 262.3 157 79.6
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 3.2e-68 261.9 159 79.9
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 3.2e-68 261.9 161 78.3
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 4.2e-68 261.5 162 79.0
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 5.5e-68 261.2 159 79.2
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 7.2e-68 260.8 160 80.0
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 9.4e-68 260.4 161 77.6
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 9.4e-68 260.4 160 78.8
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 9.4e-68 260.4 154 81.2
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.2e-67 260.0 162 77.8
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.2e-67 260.0 162 76.5
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 1.6e-67 259.6 185 70.8
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.6e-67 259.6 162 75.9
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.6e-67 259.6 162 74.1
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.6e-67 259.6 162 76.5
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 2.1e-67 259.2 160 77.5
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 2.1e-67 259.2 154 81.2
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.7e-67 258.8 162 77.2
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 4.6e-67 258.1 159 78.0
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 7.9e-67 257.3 154 79.9
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 7.9e-67 257.3 144 88.9
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 7.9e-67 257.3 158 77.2
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.0e-66 256.9 154 80.5
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.4e-66 256.5 157 78.3
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.8e-66 256.1 151 81.5
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 2.3e-66 255.8 162 78.4
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 3.0e-66 255.4 154 79.2
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 3.9e-66 255.0 154 78.6
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 3.9e-66 255.0 159 77.4
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 5.1e-66 254.6 171 76.6
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 5.1e-66 254.6 159 76.1
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 8.8e-66 253.8 162 73.5
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 2.0e-65 252.7 145 84.1
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 9.7e-65 250.4 154 77.3
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-64 250.0 162 71.6
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 2.2e-64 249.2 153 77.8
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.8e-64 248.8 145 82.1
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 6.3e-64 247.7 151 78.1
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 3.1e-63 245.4 158 73.4
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 4.1e-63 245.0 152 79.6
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 9.1e-63 243.8 144 81.2
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 9.1e-63 243.8 148 79.7
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.0e-61 240.4 158 73.4
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.3e-61 240.0 137 84.7
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.3e-61 240.0 142 81.0
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.7e-61 239.6 138 84.1
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 2.2e-61 239.2 161 70.8
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 8.5e-61 237.3 162 69.1
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.4e-60 236.5 154 71.4
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.7e-59 232.3 159 71.7
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 6.1e-59 231.1 137 81.8
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 5.1e-58 228.0 157 68.8
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 8.2e-56 220.7 156 71.8
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 4.1e-55 218.4 160 65.0
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 5.3e-55 218.0 135 83.0
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.2e-51 206.8 162 66.7
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.3e-48 196.8 155 65.2
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 6.3e-48 194.5 147 66.7
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 8.2e-48 194.1 117 76.9
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 1.4e-47 193.4 153 57.5
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 4.5e-46 188.3 110 82.7
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 5.9e-46 188.0 109 82.6
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.7e-45 186.4 117 79.5
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 6.5e-45 184.5 113 82.3
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 1.9e-44 183.0 141 66.7
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 3.2e-44 182.2 161 52.2
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-39 166.8 113 70.8
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 4.1e-39 165.2 150 54.7
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 4.1e-39 165.2 111 74.8
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.6e-38 163.3 100 82.0
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.5e-33 144.4 77 84.4
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.7e-32 142.1 119 60.5
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.1e-31 139.0 152 48.7
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.3e-29 133.7 111 61.3
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.7e-29 133.3 89 74.2
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.3e-28 129.0 77 74.0
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.5e-28 127.5 68 83.8
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.6e-27 126.7 77 76.6
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.8e-24 115.9 136 47.8
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 4.9e-24 115.2 120 55.8
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 2.0e-22 109.8 173 43.4
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 5.9e-22 108.2 64 82.8
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 5.6e-20 101.7 67 74.6
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.0e-18 97.4 52 86.5
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.1e-18 95.9 77 61.0
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.5e-17 93.6 66 66.7
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 2.4e-15 86.3 58 69.0
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 7.0e-15 84.7 58 69.0
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.2e-07 59.3 33 78.8


User provided reference genes

Program Settings