Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G123800 Phaseolus vulgaris HOM05D002971 ORTHO05D003358 2.9e-67 258.5 132 100.0
Glyma.12G184800 Glycine max HOM05D002971 ORTHO05D003358 2.3e-32 142.5 124 65.3
Glyma.13G316500 Glycine max HOM05D002971 ORTHO05D003358 7.4e-31 137.5 140 60.7
VMungo1080G0297 Vigna mungo HOM05D002971 ORTHO05D003358 9.1e-29 130.6 123 62.6
arahy.Tifrunner.gnm1.ann1.T13AP3 Arachis hypogaea HOM05D002971 ORTHO05D003358 3.0e-16 89.0 65 64.6
Lalb_Chr14g0376051 Lupinus albus HOM05D002971 ORTHO05D003358 2.6e-15 85.9 113 46.0
Medtr2g086480 Medicago truncatula HOM05D002971 ORTHO05D036715 4.4e-15 85.1 108 50.9
Lj3g0006810 Lotus japonicus HOM05D002971 ORTHO05D003358 2.2e-14 82.8 108 49.1
TPR.G34930 Trifolium pratense HOM05D002971 ORTHO05D003358 1.1e-13 80.5 112 47.3
Ca_01661_v3 Cicer arietinum L. HOM05D002971 ORTHO05D003358 4.1e-13 78.6 94 51.1
Psat5g257360 Pisum sativum HOM05D002971 ORTHO05D003358 2.2e-11 72.8 59 61.0
FAN16G2298 Fragaria x ananassa HOM05D002971 ORTHO05D003358 8.5e-11 70.9 77 50.6
FAN21G3923 Fragaria x ananassa HOM05D002971 ORTHO05D003358 1.5e-10 70.1 77 49.4
FvH4_3g24891 Fragaria vesca HOM05D002971 ORTHO05D003358 1.9e-10 69.7 77 50.6
FAN11G0501 Fragaria x ananassa HOM05D002971 ORTHO05D003358 1.9e-10 69.7 77 50.6
Dinv42556 Davidia involucrata HOM05D002971 ORTHO05D003358 3.2e-10 68.9 62 53.2
Potri.009G164000 Populus trichocarpa HOM05D002971 ORTHO05D003358 9.4e-10 67.4 61 59.0
Duzib168G2399 Durio zibethinus HOM05D002971 ORTHO05D003358 1.2e-09 67.0 104 42.3
Prupe.6G129600 Prunus persica HOM05D002971 ORTHO05D003358 1.2e-09 67.0 62 53.2
Thecc.09G283900 Theobroma cacao HOM05D002971 ORTHO05D003358 1.2e-09 67.0 63 54.0
MD00G1073200 Malus domestica HOM05D002971 ORTHO05D003358 2.7e-09 65.9 75 46.7
QL01p012303 Quercus lobata HOM05D002971 ORTHO05D003358 3.6e-09 65.5 60 58.3
Dinv29481 Davidia involucrata HOM05D002971 ORTHO05D003358 4.7e-09 65.1 63 54.0
Potri.004G203000 Populus trichocarpa HOM05D002971 ORTHO05D003358 4.7e-09 65.1 112 38.4
HanXRQChr08g0229911 Helianthus annuus HOM05D002971 ORTHO05D003358 6.1e-09 64.7 69 56.5
Hma1.2p1_0232F.1_g097870 Hydrangea macrophylla HOM05D002971 ORTHO05D003358 6.1e-09 64.7 64 57.8
Eucgr.B03851 Eucalyptus grandis HOM05D002971 ORTHO05D003358 8.0e-09 64.3 61 52.5
Lj3P997T43 Lonicera japonica HOM05D002971 ORTHO05D003358 1.0e-08 63.9 84 47.6
HanXRQChr01g0001961 Helianthus annuus HOM05D002971 ORTHO05D003358 1.4e-08 63.5 66 54.5
ECA247G2832 Erigeron canadensis HOM05D002971 ORTHO05D003358 1.8e-08 63.2 68 50.0
RcHm_v2.0_Chr5g0044531 Rosa chinensis HOM05D002971 ORTHO05D003358 1.8e-08 63.2 106 38.7
Gohir.A05G081100 Gossypium hirsutum HOM05D002971 ORTHO05D003358 2.3e-08 62.8 63 49.2
Gohir.D05G084100 Gossypium hirsutum HOM05D002971 ORTHO05D003358 2.3e-08 62.8 63 49.2
Gorai.009G085900 Gossypium raimondii HOM05D002971 ORTHO05D003358 2.3e-08 62.8 63 49.2
Medtr1g059990 Medicago truncatula HOM05D002971 ORTHO05D003358 2.3e-08 62.8 62 54.8
ECA248G0425 Erigeron canadensis HOM05D002971 ORTHO05D003358 3.0e-08 62.4 66 53.0
Thhalv10010806m.g Eutrema salsugineum HOM05D002971 ORTHO05D003358 3.0e-08 62.4 111 37.8
Nitab4.5_0009459g0030 Nicotiana tabacum HOM05D002971 ORTHO05D003358 3.0e-08 62.4 112 45.5
Sed0027558 Sechium edule HOM05D002971 ORTHO05D003358 3.0e-08 62.4 75 48.0
Lsat_1_v5_gn_5_164760 Lactuca sativa HOM05D002971 ORTHO05D003358 4.0e-08 62.0 66 54.5
Potri.009G163900 Populus trichocarpa HOM05D002971 ORTHO05D003358 4.0e-08 62.0 63 49.2
Gohir.A01G206600 Gossypium hirsutum HOM05D002971 ORTHO05D003358 5.2e-08 61.6 78 41.0
PGR102G0102 Punica granatum HOM05D002971 ORTHO05D003358 5.2e-08 61.6 125 36.8
Aqoxy4G02781 Aquilegia oxysepala HOM05D002971 ORTHO05D003358 6.7e-08 61.2 66 53.0
COL.COLO4_29740 Corchorus olitorius HOM05D002971 ORTHO05D003358 6.7e-08 61.2 81 46.9
Glyma.10G072000 Glycine max HOM05D002971 ORTHO05D003358 8.8e-08 60.8 63 55.6
Manes.11G161700 Manihot esculenta HOM05D002971 ORTHO05D003358 8.8e-08 60.8 107 43.0
BcaB01g00345 Brassica carinata HOM05D002971 ORTHO05D003358 1.2e-07 60.5 116 39.7
Ciclev10012842m.g Citrus clementina HOM05D002971 ORTHO05D003358 1.2e-07 60.5 63 52.4
COL.COLO4_19881 Corchorus olitorius HOM05D002971 ORTHO05D003358 1.2e-07 60.5 124 33.9
DCAR_009161 Daucus carota HOM05D002971 ORTHO05D003358 1.2e-07 60.5 66 51.5
Duzib150G0794 Durio zibethinus HOM05D002971 ORTHO05D003358 1.2e-07 60.5 67 46.3
Gohir.D01G196000 Gossypium hirsutum HOM05D002971 ORTHO05D003358 1.2e-07 60.5 76 43.4
HanXRQChr02g0044431 Helianthus annuus HOM05D002971 ORTHO05D003358 1.2e-07 60.5 66 53.0
Psat6g081160 Pisum sativum HOM05D002971 ORTHO05D003358 1.2e-07 60.5 114 41.2
arahy.Tifrunner.gnm1.ann1.2VK3FY Arachis hypogaea HOM05D002971 ORTHO05D003358 1.5e-07 60.1 63 55.6
arahy.Tifrunner.gnm1.ann1.4E80DN Arachis hypogaea HOM05D002971 ORTHO05D003358 1.5e-07 60.1 63 55.6
ClCG10G019000 Citrullus lanatus HOM05D002971 ORTHO05D003358 1.5e-07 60.1 63 55.6
Dinv21212 Davidia involucrata HOM05D002971 ORTHO05D003358 1.5e-07 60.1 63 54.0
HanXRQChr05g0133241 Helianthus annuus HOM05D002971 ORTHO05D003358 1.5e-07 60.1 67 52.2
Lsat_1_v5_gn_8_77040 Lactuca sativa HOM05D002971 ORTHO05D003358 1.5e-07 60.1 64 51.6
Thecc.05G088600 Theobroma cacao HOM05D002971 ORTHO05D003358 1.5e-07 60.1 63 55.6
TWI74G0300 Tripterygium wilfordii HOM05D002971 ORTHO05D003358 1.5e-07 60.1 94 42.6
CANSAT78G1472 Cannabis sativa HOM05D002971 ORTHO05D003358 2.0e-07 59.7 62 50.0
Gohir.1Z049556 Gossypium hirsutum HOM05D002971 ORTHO05D003358 2.0e-07 59.7 63 54.0
Gohir.A04G063385 Gossypium hirsutum HOM05D002971 ORTHO05D003358 2.0e-07 59.7 63 54.0
Lsat_1_v5_gn_9_20540 Lactuca sativa HOM05D002971 ORTHO05D003358 2.0e-07 59.7 65 52.3
MD03G1143800 Malus domestica HOM05D002971 ORTHO05D003358 2.0e-07 59.7 110 39.1
VMungo1383G3159 Vigna mungo HOM05D002971 ORTHO05D003358 2.0e-07 59.7 78 51.3
BcaB02g08556 Brassica carinata HOM05D002971 ORTHO05D003358 2.6e-07 59.3 61 54.1
Cpa.g.sc5.23 Carica papaya HOM05D002971 ORTHO05D003358 2.6e-07 59.3 85 44.7
CiPaw.10G009300 Carya illinoinensis HOM05D002971 ORTHO05D003358 2.6e-07 59.3 65 52.3
Gorai.002G240200 Gossypium raimondii HOM05D002971 ORTHO05D003358 2.6e-07 59.3 71 46.5
Lj2C136T8 Lonicera japonica HOM05D002971 ORTHO05D003358 2.6e-07 59.3 63 52.4
Lj2C136T9 Lonicera japonica HOM05D002971 ORTHO05D003358 2.6e-07 59.3 63 52.4
Phvul.001G189900 Phaseolus vulgaris HOM05D002971 ORTHO05D003358 2.6e-07 59.3 86 41.9
TPR.G6026 Trifolium pratense HOM05D002971 ORTHO05D003358 2.6e-07 59.3 68 50.0
Cfa016604 Carpinus fangiana HOM05D002971 ORTHO05D003358 3.3e-07 58.9 63 50.8
Duzib106G1893 Durio zibethinus HOM05D002971 ORTHO05D003358 3.3e-07 58.9 63 54.0
Lj1g0014395 Lotus japonicus HOM05D002971 ORTHO05D003358 3.3e-07 58.9 58 58.6
QL07p038814 Quercus lobata HOM05D002971 ORTHO05D003358 3.3e-07 58.9 63 52.4
SalBow3G4581 Salvia bowleyana HOM05D002971 ORTHO05D003358 3.3e-07 58.9 84 42.9
TAR636G0942 Trochodendron aralioides HOM05D002971 ORTHO05D003358 3.3e-07 58.9 58 56.9
Cc01_g09270 Coffea canephora HOM05D002971 ORTHO05D003358 4.4e-07 58.5 63 52.4
CsaV3_6G014970 Cucumis sativus L. HOM05D002971 ORTHO05D003358 4.4e-07 58.5 76 46.1
Lalb_Chr02g0154951 Lupinus albus HOM05D002971 ORTHO05D003358 4.4e-07 58.5 59 57.6
Os02g0532800 Oryza sativa ssp. japonica HOM05D002971 ORTHO05D003358 4.4e-07 58.5 57 54.4
Potri.004G202900 Populus trichocarpa HOM05D002971 ORTHO05D003358 4.4e-07 58.5 121 40.5
Actinidia05434 Actinidia chinensis HOM05D002971 ORTHO05D003358 5.7e-07 58.2 62 50.0
Ca_09002_v3 Cicer arietinum L. HOM05D002971 ORTHO05D003358 5.7e-07 58.2 65 53.8
ClCG02G022130 Citrullus lanatus HOM05D002971 ORTHO05D003358 5.7e-07 58.2 106 38.7
Haze_19606 Corylus avellana HOM05D002971 ORTHO05D003358 5.7e-07 58.2 63 50.8
MELO3C021428.2 Cucumis melo HOM05D002971 ORTHO05D003358 5.7e-07 58.2 59 50.8
Glyma.19G194900 Glycine max HOM05D002971 ORTHO05D003358 5.7e-07 58.2 60 53.3
HanXRQChr13g0399081 Helianthus annuus HOM05D002971 ORTHO05D003358 5.7e-07 58.2 68 47.1
Nitab4.5_0000755g0190 Nicotiana tabacum HOM05D002971 ORTHO05D003358 5.7e-07 58.2 88 44.3
Phvul.007G227500 Phaseolus vulgaris HOM05D002971 ORTHO05D003358 5.7e-07 58.2 92 46.7
Sed0013825 Sechium edule HOM05D002971 ORTHO05D003358 5.7e-07 58.2 78 44.9
TWI53G1371 Tripterygium wilfordii HOM05D002971 ORTHO05D003358 5.7e-07 58.2 97 42.3
DCAR_020751 Daucus carota HOM05D002971 ORTHO05D003358 7.5e-07 57.8 65 49.2
MBI17_g08360_MAGBIO Magnolia biondii HOM05D002971 ORTHO05D003358 7.5e-07 57.8 66 50.0
QL07p039076 Quercus lobata HOM05D002971 ORTHO05D003358 7.5e-07 57.8 63 50.8
Zm00001eb242760 Zea mays HOM05D002971 ORTHO05D003358 7.5e-07 57.8 56 53.6
CiPaw.09G013500 Carya illinoinensis HOM05D002971 ORTHO05D003358 9.7e-07 57.4 63 49.2
Migut.L01776 Erythranthe guttata HOM05D002971 ORTHO05D003358 9.7e-07 57.4 65 52.3
FAN05G5184 Fragaria x ananassa HOM05D002971 ORTHO05D003358 9.7e-07 57.4 106 37.7
Glyma.13G153400 Glycine max HOM05D002971 ORTHO05D003358 9.7e-07 57.4 99 46.5
Gohir.D04G100100 Gossypium hirsutum HOM05D002971 ORTHO05D003358 9.7e-07 57.4 82 45.1
Gorai.009G403000 Gossypium raimondii HOM05D002971 ORTHO05D003358 9.7e-07 57.4 82 45.1
PSO384G1229 Papaver somniferum HOM05D002971 ORTHO05D003358 9.7e-07 57.4 58 53.4
ClCG04G010040 Citrullus lanatus HOM05D002971 ORTHO05D003358 1.3e-06 57.0 99 41.4
Nitab4.5_0001977g0010 Nicotiana tabacum HOM05D002971 ORTHO05D003358 1.3e-06 57.0 71 49.3
Actinidia07928 Actinidia chinensis HOM05D002971 ORTHO05D003358 1.7e-06 56.6 61 54.1
CANSAT80G2111 Cannabis sativa HOM05D002971 ORTHO05D003358 1.7e-06 56.6 65 49.2
Cc06_g05710 Coffea canephora HOM05D002971 ORTHO05D003358 1.7e-06 56.6 70 48.6
Lalb_Chr01g0018161 Lupinus albus HOM05D002971 ORTHO05D003358 1.7e-06 56.6 84 48.8
Medtr7g104540 Medicago truncatula HOM05D002971 ORTHO05D003358 1.7e-06 56.6 65 53.8
Nn6g34905 Nelumbo nucifera HOM05D002971 ORTHO05D003358 1.7e-06 56.6 62 53.2
SalBow5G0041 Salvia bowleyana HOM05D002971 ORTHO05D003358 1.7e-06 56.6 62 53.2
Aa31LG10G7750 Aethionema arabicum HOM05D002971 ORTHO05D003358 2.2e-06 56.2 59 52.5
BcaC07g39639 Brassica carinata HOM05D002971 ORTHO05D003358 2.2e-06 56.2 115 38.3
C08p28020 Brassica napus HOM05D002971 ORTHO05D003358 2.2e-06 56.2 115 38.3
BolC8t50414H Brassica oleracea HOM05D002971 ORTHO05D003358 2.2e-06 56.2 115 38.3
BraA09t40044Z Brassica rapa HOM05D002971 ORTHO05D003358 2.2e-06 56.2 116 37.9
FAN05G3027 Fragaria x ananassa HOM05D002971 ORTHO05D003358 2.2e-06 56.2 119 35.3
Manes.04G003600 Manihot esculenta HOM05D002971 ORTHO05D003358 2.2e-06 56.2 60 51.7
Peaxi162Scf00290g00064 Petunia axillaris HOM05D002971 ORTHO05D003358 2.2e-06 56.2 122 36.1
PGR004G2629 Punica granatum HOM05D002971 ORTHO05D003358 2.2e-06 56.2 64 50.0
RcHm_v2.0_Chr3g0473581 Rosa chinensis HOM05D002971 ORTHO05D003358 2.2e-06 56.2 63 49.2
THA.LOC104827509 Tarenaya hassleriana HOM05D002971 ORTHO05D003358 2.2e-06 56.2 62 50.0
Zm00001eb083970 Zea mays HOM05D002971 ORTHO05D003358 2.2e-06 56.2 76 42.1
BraA04t16376Z Brassica rapa HOM05D002971 ORTHO05D003358 2.8e-06 55.8 114 39.5
CANSAT54G2951 Cannabis sativa HOM05D002971 ORTHO05D003358 2.8e-06 55.8 121 35.5
Duzib128G1708 Durio zibethinus HOM05D002971 ORTHO05D003358 2.8e-06 55.8 58 55.2
Migut.J01042 Erythranthe guttata HOM05D002971 ORTHO05D003358 2.8e-06 55.8 118 37.3
FvH4_6g18630 Fragaria vesca HOM05D002971 ORTHO05D003358 2.8e-06 55.8 130 34.6
Oeu039078.1 Olea europaea HOM05D002971 ORTHO05D003358 2.8e-06 55.8 133 36.1
Sed0010508 Sechium edule HOM05D002971 ORTHO05D003358 2.8e-06 55.8 86 45.3
AT3G52740 Arabidopsis thaliana HOM05D002971 ORTHO05D003358 3.7e-06 55.5 95 41.1
A04p06720 Brassica napus HOM05D002971 ORTHO05D003358 3.7e-06 55.5 114 38.6
Hma1.2p1_0578F.1_g182490 Hydrangea macrophylla HOM05D002971 ORTHO05D003358 3.7e-06 55.5 64 45.3
Rhsim03G0075700 Rhododendron simsii HOM05D002971 ORTHO05D003358 3.7e-06 55.5 92 46.7
Sp5g09590 Schrenkiella parvula HOM05D002971 ORTHO05D003358 3.7e-06 55.5 61 50.8
Atru.chr3.3250 Acer truncatum HOM05D002971 ORTHO05D003358 4.8e-06 55.1 117 37.6
Carub.0005s1919 Capsella rubella HOM05D002971 ORTHO05D003358 4.8e-06 55.1 102 37.3
FAN02G2601 Fragaria x ananassa HOM05D002971 ORTHO05D003358 4.8e-06 55.1 130 33.8
Glyma.03G195300 Glycine max HOM05D002971 ORTHO05D003358 4.8e-06 55.1 57 56.1
Nn2g14154 Nelumbo nucifera HOM05D002971 ORTHO05D003358 4.8e-06 55.1 64 46.9
Peaxi162Scf00003g00510 Petunia axillaris HOM05D002971 ORTHO05D003358 6.3e-06 54.7 114 36.8
Psat3g033520 Pisum sativum HOM05D002971 ORTHO05D003358 6.3e-06 54.7 94 44.7
Sabra09G0128200 Salix brachista HOM05D002971 ORTHO05D003358 6.3e-06 54.7 63 44.4
Sed0008713 Sechium edule HOM05D002971 ORTHO05D003358 6.3e-06 54.7 94 46.8
TWI79G0898 Tripterygium wilfordii HOM05D002971 ORTHO05D003358 6.3e-06 54.7 59 49.2
CARHR104470 Cardamine hirsuta HOM05D002971 ORTHO05D003358 8.2e-06 54.3 56 55.4
Duzib093G0696 Durio zibethinus HOM05D002971 ORTHO05D003358 8.2e-06 54.3 92 43.5


User provided reference genes

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