Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 1.9e-26 121.7 59 100.0
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 1.8e-24 115.2 59 94.9
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 2.5e-23 111.3 59 91.5
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 3.1e-21 104.4 55 89.1
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 9.0e-21 102.8 56 83.9
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 1.2e-20 102.4 59 81.4
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 2.0e-20 101.7 58 79.3
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 2.6e-20 101.3 52 88.5
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 2.6e-20 101.3 57 82.5
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 3.4e-20 100.9 52 90.4
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 4.5e-20 100.5 56 85.7
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 3.8e-19 97.4 57 78.9
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 3.8e-19 97.4 55 81.8
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 6.5e-19 96.7 57 75.4
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 6.5e-19 96.7 57 75.4
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 6.5e-19 96.7 57 78.9
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 8.5e-19 96.3 53 84.9
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 8.5e-19 96.3 56 76.8
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 1.9e-18 95.1 57 75.4
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 1.9e-18 95.1 58 75.9
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 2.5e-18 94.7 57 77.2
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 3.2e-18 94.4 53 83.0
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 4.2e-18 94.0 51 86.3
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 5.5e-18 93.6 58 74.1
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 7.2e-18 93.2 58 74.1
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 9.4e-18 92.8 53 81.1
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 1.2e-17 92.4 59 71.2
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 1.2e-17 92.4 60 75.0
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 1.6e-17 92.0 60 76.7
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 2.1e-17 91.7 59 76.3
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 2.1e-17 91.7 59 76.3
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 2.1e-17 91.7 59 76.3
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 2.1e-17 91.7 57 73.7
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 2.7e-17 91.3 58 72.4
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 2.7e-17 91.3 58 75.9
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 2.7e-17 91.3 60 75.0
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 2.7e-17 91.3 52 80.8
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 2.7e-17 91.3 56 73.2
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 3.6e-17 90.9 51 82.4
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 4.6e-17 90.5 59 72.9
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 4.6e-17 90.5 60 75.0
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 4.6e-17 90.5 51 80.4
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 4.6e-17 90.5 50 82.0
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 6.1e-17 90.1 59 76.3
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 6.1e-17 90.1 51 82.4
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 6.1e-17 90.1 51 82.4
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 7.9e-17 89.7 54 77.8
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 7.9e-17 89.7 56 73.2
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 1.0e-16 89.4 54 74.1
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 1.0e-16 89.4 57 70.2
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 1.0e-16 89.4 57 70.2
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 1.0e-16 89.4 58 72.4
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 1.0e-16 89.4 53 75.5
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 1.0e-16 89.4 51 80.4
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 1.0e-16 89.4 57 73.7
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 1.0e-16 89.4 53 75.5
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 1.0e-16 89.4 60 71.7
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 1.4e-16 89.0 51 80.4
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 1.4e-16 89.0 50 84.0
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 5.1e-16 87.0 57 66.7
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 8.8e-16 86.3 59 67.8
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 1.1e-15 85.9 54 72.2
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 1.1e-15 85.9 57 70.2
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 7.4e-15 83.2 51 74.5
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 9.7e-15 82.8 59 67.8
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 1.7e-14 82.0 51 72.5
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 2.2e-14 81.6 51 74.5
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 3.7e-14 80.9 59 66.1
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 3.7e-14 80.9 41 90.2
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 8.2e-14 79.7 59 66.1
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 8.2e-14 79.7 49 73.5
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 1.1e-13 79.3 41 87.8
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.8e-13 78.6 41 85.4
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 1.8e-13 78.6 41 85.4
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.4e-13 78.2 41 82.9
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 4.1e-13 77.4 41 82.9
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 5.3e-13 77.0 42 81.0
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 6.9e-13 76.6 41 85.4
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.2e-12 75.9 42 81.0
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 1.2e-12 75.9 41 82.9
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 4.5e-12 73.9 45 73.3
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 4.5e-12 73.9 44 77.3
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 4.5e-12 73.9 42 78.6
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 1.3e-11 72.4 50 70.0
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 2.2e-11 71.6 39 84.6
Mapoly0009s0018 Marchantia polymorpha HOM05D007733 ORTHO05D009786 5.5e-10 67.0 47 61.7
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 7.2e-10 66.6 40 70.0
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 7.2e-10 66.6 40 70.0
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 1.6e-09 65.5 41 70.7
CBR_g21252 Chara braunii HOM05D007733 ORTHO05D009786 3.9e-08 60.8 49 53.1
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 5.1e-08 60.5 34 82.4
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 4.4e-07 57.4 34 73.5
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.3e-06 55.8 51 62.7


User provided reference genes

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