Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.6e-97 359.4 175 100.0
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 3.4e-76 288.5 175 81.7
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 1.9e-74 282.7 177 80.2
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 1.2e-65 253.4 175 69.1
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 8.0e-65 250.8 176 71.0
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 2.2e-62 242.7 176 68.2
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 4.1e-61 238.4 172 69.2
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 9.1e-61 237.3 175 65.7
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 1.6e-60 236.5 177 66.1
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 6.5e-59 231.1 175 65.7
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 1.9e-58 229.6 175 65.1
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 1.9e-58 229.6 175 66.9
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 1.2e-57 226.9 175 63.4
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 2.8e-54 215.7 176 65.3
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 3.7e-54 215.3 176 65.3
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 2.4e-53 212.6 176 62.5
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 4.1e-53 211.8 173 61.8
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 9.1e-53 210.7 175 61.1
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 9.1e-53 210.7 179 61.5
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 5.9e-52 208.0 179 60.3
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 3.8e-51 205.3 179 60.3
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 6.5e-51 204.5 171 60.8
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 8.5e-51 204.1 179 59.2
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 2.5e-50 202.6 179 59.8
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 9.4e-50 200.7 182 61.0
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 2.1e-49 199.5 176 58.0
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 2.7e-49 199.1 181 58.6
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 1.4e-48 196.8 180 56.7
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 2.3e-48 196.1 180 59.4
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 5.2e-48 194.9 183 59.0
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 5.2e-48 194.9 179 58.1
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 8.8e-48 194.1 172 55.8
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 8.8e-48 194.1 176 60.2
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 1.2e-47 193.7 180 56.1
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 3.4e-47 192.2 176 59.1
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 3.4e-47 192.2 176 59.1
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 7.5e-47 191.0 175 54.9
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 7.5e-47 191.0 171 59.1
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 9.8e-47 190.7 180 56.1
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 9.8e-47 190.7 175 56.0
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.7e-46 188.7 171 59.6
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 8.3e-46 187.6 177 57.6
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 8.3e-46 187.6 169 60.4
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 2.4e-45 186.0 182 56.6
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 3.1e-45 185.7 175 56.6
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 3.1e-45 185.7 175 56.6
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 7.0e-45 184.5 175 56.6
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 9.1e-45 184.1 175 56.6
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 5.9e-44 181.4 175 52.0
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 2.9e-43 179.1 179 52.5
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 1.1e-42 177.2 175 52.0
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 2.5e-42 176.0 162 53.7
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 2.1e-41 172.9 183 53.6
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 1.4e-40 170.2 187 49.7
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 1.4e-40 170.2 173 52.0
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 2.3e-40 169.5 176 51.1
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 5.2e-40 168.3 181 53.6
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 8.9e-40 167.5 179 49.7
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 2.6e-39 166.0 176 53.4
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.6e-39 166.0 180 52.8
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 7.5e-39 164.5 179 52.5
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 2.2e-38 162.9 177 48.0
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 2.9e-38 162.5 176 49.4
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 2.9e-38 162.5 172 52.3
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 4.9e-38 161.8 176 47.7
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 4.9e-38 161.8 176 48.3
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 6.4e-38 161.4 180 48.9
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 2.4e-37 159.5 180 46.7
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 3.2e-37 159.1 174 50.0
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 3.2e-37 159.1 176 47.2
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 3.2e-37 159.1 178 48.9
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 5.4e-37 158.3 171 49.7
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 9.2e-37 157.5 180 47.8
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 1.6e-36 156.8 177 45.8
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 1.6e-36 156.8 174 48.9
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 2.0e-36 156.4 178 48.3
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 5.9e-36 154.8 190 44.7
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.3e-35 153.7 178 47.2
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 5.0e-35 151.8 169 47.3
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 5.0e-35 151.8 169 47.3
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 6.6e-35 151.4 169 49.1
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 8.6e-35 151.0 184 45.7
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.1e-34 150.6 170 50.0
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 1.1e-34 150.6 173 48.0
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 3.3e-34 149.1 184 48.9
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 4.3e-34 148.7 178 47.8
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 4.3e-34 148.7 170 48.2
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 5.6e-34 148.3 178 47.2
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 9.5e-34 147.5 179 43.0
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.2e-33 147.1 187 44.9
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 1.6e-33 146.7 184 46.7
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 1.6e-33 146.7 189 45.0
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.6e-33 146.7 184 46.2
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 2.1e-33 146.4 169 49.7
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 6.2e-33 144.8 172 48.8
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 8.0e-33 144.4 184 45.7
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 8.9e-32 141.0 186 45.7
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.2e-31 140.6 168 49.4
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 1.2e-31 140.6 168 50.0
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.6e-31 139.4 161 48.4
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 3.4e-31 139.0 168 49.4
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 5.8e-31 138.3 168 49.4
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 5.8e-31 138.3 168 49.4
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 7.5e-31 137.9 168 48.8
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.7e-30 136.7 164 48.8
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.9e-30 136.0 127 55.9
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 8.3e-30 134.4 168 47.0
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 8.3e-30 134.4 172 47.7
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.4e-29 133.7 170 44.7
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 1.4e-29 133.7 181 45.3
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.6e-28 130.2 155 48.4
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 4.6e-28 128.6 167 45.5
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 6.0e-28 128.3 170 44.7
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.0e-27 127.5 169 43.2
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 1.3e-27 127.1 174 43.7
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 3.9e-27 125.6 167 44.3
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 5.0e-27 125.2 174 44.3
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 8.6e-27 124.4 171 44.4
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 3.3e-26 122.5 132 50.0
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 5.6e-26 121.7 175 45.1
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 7.3e-26 121.3 125 52.8
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 9.5e-26 120.9 174 42.0
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.2e-25 120.6 168 44.6
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 1.2e-25 120.6 155 46.5
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 1.2e-25 120.6 174 42.5
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.2e-25 120.6 175 44.6
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 2.1e-25 119.8 174 42.0
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.1e-24 117.5 175 44.0
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 6.8e-24 114.8 175 42.9
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 2.6e-23 112.8 169 42.6
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 4.4e-23 112.1 135 46.7
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 6.4e-22 108.2 102 54.9
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 2.4e-21 106.3 145 43.4
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.2e-20 104.0 116 49.1
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 3.0e-19 99.4 117 38.5
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 1.9e-18 96.7 188 35.1
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 5.6e-18 95.1 192 34.4
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 8.9e-16 87.8 86 53.5
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 3.4e-15 85.9 153 34.0
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 5.8e-15 85.1 68 60.3
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 1.6e-12 77.0 173 35.3
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 3.5e-12 75.9 167 35.3
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.1e-10 70.9 99 42.4


User provided reference genes

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