Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 9.1e-52 206.5 93 100.0
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 1.3e-45 186.0 91 87.9
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 1.4e-44 182.6 91 86.8
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 9.2e-44 179.9 91 85.7
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 1.3e-42 176.0 89 88.8
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 3.9e-42 174.5 89 85.4
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 3.3e-41 171.4 89 83.1
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 3.3e-41 171.4 89 83.1
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 3.3e-41 171.4 89 83.1
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 3.3e-41 171.4 89 83.1
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 1.5e-38 162.5 90 80.0
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 5.8e-38 160.6 82 84.1
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 2.2e-37 158.7 82 81.7
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 2.9e-37 158.3 82 84.1
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 6.4e-37 157.1 82 81.7
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 6.4e-37 157.1 82 82.9
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 1.1e-36 156.4 81 82.7
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 1.4e-36 156.0 85 80.0
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 1.4e-36 156.0 81 82.7
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 1.4e-36 156.0 81 82.7
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 1.4e-36 156.0 81 82.7
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 2.4e-36 155.2 82 82.9
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 2.4e-36 155.2 82 80.5
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 2.4e-36 155.2 82 82.9
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 7.0e-36 153.7 82 81.7
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 7.0e-36 153.7 82 81.7
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 9.2e-36 153.3 82 80.5
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 9.2e-36 153.3 83 79.5
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 1.6e-35 152.5 79 82.3
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 1.6e-35 152.5 82 81.7
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.6e-35 152.5 82 81.7
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.6e-35 152.5 82 81.7
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 1.6e-35 152.5 82 81.7
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 2.0e-35 152.1 82 79.3
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 2.7e-35 151.8 82 78.0
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 3.5e-35 151.4 80 81.2
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 4.6e-35 151.0 80 81.2
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 4.6e-35 151.0 81 79.0
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 4.6e-35 151.0 81 79.0
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 6.0e-35 150.6 82 79.3
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 1.0e-34 149.8 82 79.3
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 1.7e-34 149.1 83 75.9
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 1.7e-34 149.1 83 79.5
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 1.7e-34 149.1 83 79.5
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 1.7e-34 149.1 83 79.5
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 1.7e-34 149.1 83 79.5
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.7e-34 149.1 84 77.4
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 1.7e-34 149.1 77 83.1
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 1.7e-34 149.1 79 81.0
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 1.7e-34 149.1 80 80.0
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.3e-34 148.7 82 80.5
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 3.0e-34 148.3 90 76.7
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 3.0e-34 148.3 79 78.5
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 3.9e-34 147.9 82 79.3
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 5.0e-34 147.5 84 77.4
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 5.0e-34 147.5 82 79.3
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 5.0e-34 147.5 77 81.8
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 5.0e-34 147.5 82 79.3
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 5.0e-34 147.5 82 79.3
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 5.0e-34 147.5 82 75.6
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 6.6e-34 147.1 90 75.6
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 6.6e-34 147.1 90 75.6
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 6.6e-34 147.1 90 75.6
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 6.6e-34 147.1 82 78.0
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 8.6e-34 146.7 90 76.7
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.1e-33 146.4 83 74.7
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 1.1e-33 146.4 82 74.4
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 1.1e-33 146.4 79 79.7
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 1.5e-33 146.0 90 75.6
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 1.5e-33 146.0 82 75.6
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 1.5e-33 146.0 82 75.6
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 2.5e-33 145.2 81 75.3
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 2.5e-33 145.2 82 73.2
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 5.6e-33 144.1 83 74.7
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 9.5e-33 143.3 82 74.4
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 9.5e-33 143.3 78 78.2
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 1.6e-32 142.5 63 96.8
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 2.1e-32 142.1 79 79.7
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 2.1e-32 142.1 81 72.8
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 2.8e-32 141.7 82 76.8
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 4.7e-32 141.0 87 72.4
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 4.7e-32 141.0 87 72.4
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 4.7e-32 141.0 78 76.9
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 6.2e-32 140.6 81 72.8
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 6.2e-32 140.6 79 74.7
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 2.3e-31 138.7 78 74.4
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 2.3e-31 138.7 81 72.8
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 4.0e-31 137.9 90 68.9
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 5.2e-31 137.5 78 74.4
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 1.2e-30 136.3 79 72.2
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 1.5e-30 136.0 78 75.6
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 3.4e-30 134.8 79 73.4
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 3.4e-30 134.8 103 61.2
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 4.4e-30 134.4 79 73.4
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 6.4e-29 130.6 82 72.0
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 8.3e-29 130.2 83 68.7
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.4e-28 129.4 83 69.9
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.4e-28 128.6 83 67.5
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 7.1e-28 127.1 69 78.3
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 8.6e-26 120.2 61 83.6
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 1.5e-25 119.4 61 83.6
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.2e-24 116.3 62 80.6
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 3.6e-24 114.8 61 75.4
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.0e-18 96.7 52 75.0
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 3.0e-18 95.1 45 86.7
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 6.6e-18 94.0 85 52.9
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 1.2e-14 83.2 40 90.0
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 6.4e-13 77.4 56 60.7
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 5.4e-12 74.3 61 49.2
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 1.3e-10 69.7 41 75.6
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.7e-10 67.0 41 70.7
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.9e-09 65.9 41 68.3
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.5e-09 65.5 37 75.7


User provided reference genes

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