Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G111900 Phaseolus vulgaris HOM05D002786 ORTHO05D022444 2.8e-32 141.4 71 100.0
Phvul.007G001700 Phaseolus vulgaris HOM05D002786 ORTHO05D003493 1.4e-15 85.9 44 95.5
Glyma.10G297700 Glycine max HOM05D002786 ORTHO05D003493 5.2e-15 84.0 44 93.2
VMungo0720G0240 Vigna mungo HOM05D002786 ORTHO05D003493 5.2e-15 84.0 44 93.2
Ca_11422_v3 Cicer arietinum L. HOM05D002786 ORTHO05D003493 1.3e-13 79.3 44 88.6
TPR.G8888 Trifolium pratense HOM05D002786 ORTHO05D003493 1.7e-13 79.0 44 84.1
Lj5g0000254 Lotus japonicus HOM05D002786 ORTHO05D003493 2.9e-13 78.2 44 86.4
Medtr1g116957 Medicago truncatula HOM05D002786 ORTHO05D003493 3.7e-13 77.8 44 84.1
Psat6g243600 Pisum sativum HOM05D002786 ORTHO05D003493 6.4e-13 77.0 44 81.8
Lalb_Chr02g0144511 Lupinus albus HOM05D002786 ORTHO05D003493 1.9e-12 75.5 44 79.5
Phvul.008G018400 Phaseolus vulgaris HOM05D002786 ORTHO05D003493 5.4e-12 73.9 44 81.8
Ciclev10018740m.g Citrus clementina HOM05D002786 ORTHO05D003493 7.1e-12 73.6 44 81.8
Lj1g0019142 Lotus japonicus HOM05D002786 ORTHO05D003493 7.1e-12 73.6 44 79.5
Glyma.18G282800 Glycine max HOM05D002786 ORTHO05D003493 9.2e-12 73.2 44 79.5
Lalb_Chr06g0164651 Lupinus albus HOM05D002786 ORTHO05D003493 9.2e-12 73.2 44 79.5
CiPaw.01G108500 Carya illinoinensis HOM05D002786 ORTHO05D003493 2.7e-11 71.6 44 77.3
Lj3g0017626 Lotus japonicus HOM05D002786 ORTHO05D003493 3.5e-11 71.2 43 79.1
Ah.02g115110 Amaranthus hybridus HOM05D002786 ORTHO05D003493 4.6e-11 70.9 44 77.3
Ah.12g062150 Amaranthus hybridus HOM05D002786 ORTHO05D003493 4.6e-11 70.9 44 77.3
Hund15147 Selenicereus undatus HOM05D002786 ORTHO05D003493 4.6e-11 70.9 44 79.5
EL10Ac5g11639 Beta vulgaris HOM05D002786 ORTHO05D003493 6.0e-11 70.5 44 77.3
TPR.G2948 Trifolium pratense HOM05D002786 ORTHO05D003493 6.0e-11 70.5 44 75.0
VMungo1383G3085 Vigna mungo HOM05D002786 ORTHO05D003493 6.0e-11 70.5 44 77.3
CSS0033102 Camellia sinensis var. sinensis HOM05D002786 ORTHO05D003493 7.8e-11 70.1 44 75.0
Cfa008548 Carpinus fangiana HOM05D002786 ORTHO05D003493 7.8e-11 70.1 44 75.0
Dinv22652 Davidia involucrata HOM05D002786 ORTHO05D003493 7.8e-11 70.1 44 75.0
Gohir.D10G130200 Gossypium hirsutum HOM05D002786 ORTHO05D003493 1.0e-10 69.7 44 75.0
Gorai.011G143900 Gossypium raimondii HOM05D002786 ORTHO05D003493 1.0e-10 69.7 44 75.0
Hma1.2p1_0412F.1_g147160 Hydrangea macrophylla HOM05D002786 ORTHO05D003493 1.0e-10 69.7 44 72.7
Nitab4.5_0001687g0080 Nicotiana tabacum HOM05D002786 ORTHO05D003493 1.0e-10 69.7 44 72.7
Ca_07104_v3 Cicer arietinum L. HOM05D002786 ORTHO05D003493 1.3e-10 69.3 44 72.7
Ca_07106_v3 Cicer arietinum L. HOM05D002786 ORTHO05D003493 1.3e-10 69.3 44 72.7
Psat3g188480 Pisum sativum HOM05D002786 ORTHO05D003493 1.3e-10 69.3 44 75.0
COL.COLO4_10183 Corchorus olitorius HOM05D002786 ORTHO05D022444 1.7e-10 68.9 44 70.5
Haze_11083 Corylus avellana HOM05D002786 ORTHO05D003493 1.7e-10 68.9 44 75.0
Cc03_g10590 Coffea canephora HOM05D002786 ORTHO05D003493 2.3e-10 68.6 44 72.7
DCAR_026823 Daucus carota HOM05D002786 ORTHO05D003493 2.3e-10 68.6 44 72.7
Gohir.A10G136400 Gossypium hirsutum HOM05D002786 ORTHO05D003493 2.3e-10 68.6 44 72.7
Medtr7g021500 Medicago truncatula HOM05D002786 ORTHO05D003493 2.3e-10 68.6 44 72.7
SGA_v2.0_scaffold109G31145 Striga asiatica HOM05D002786 ORTHO05D003493 2.3e-10 68.6 44 70.5
GSVIVG01031670001 Vitis vinifera HOM05D002786 ORTHO05D003493 2.3e-10 68.6 44 72.7
Potri.002G232600 Populus trichocarpa HOM05D002786 ORTHO05D003493 3.0e-10 68.2 44 70.5
Potri.014G149600 Populus trichocarpa HOM05D002786 ORTHO05D003493 3.0e-10 68.2 44 70.5
Thecc.04G180600 Theobroma cacao HOM05D002786 ORTHO05D003493 3.0e-10 68.2 44 72.7
Manes.04G061600 Manihot esculenta HOM05D002786 ORTHO05D003493 3.9e-10 67.8 44 70.5
Oeu013399.2 Olea europaea HOM05D002786 ORTHO05D003493 3.9e-10 67.8 44 72.7
Atru.chr3.1801 Acer truncatum HOM05D002786 ORTHO05D003493 5.1e-10 67.4 44 72.7
CSS0009663 Camellia sinensis var. sinensis HOM05D002786 ORTHO05D003493 5.1e-10 67.4 44 70.5
vmacro00563 Vaccinium macrocarpon HOM05D002786 ORTHO05D003493 5.1e-10 67.4 44 72.7
MSTRG.24604 Avicennia marina HOM05D002786 ORTHO05D003493 6.6e-10 67.0 44 72.7
Duzib212G1023 Durio zibethinus HOM05D002786 ORTHO05D003493 6.6e-10 67.0 44 68.2
AUR62037083 Chenopodium quinoa HOM05D002786 ORTHO05D003493 8.6e-10 66.6 44 72.7
Migut.N00442 Erythranthe guttata HOM05D002786 ORTHO05D003493 8.6e-10 66.6 44 70.5
Sed0004282 Sechium edule HOM05D002786 ORTHO05D003493 8.6e-10 66.6 44 68.2
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 8.6e-10 66.6 44 68.2
Actinidia35908 Actinidia chinensis HOM05D002786 ORTHO05D003493 1.1e-09 66.2 44 72.7
arahy.Tifrunner.gnm1.ann1.0F4JWJ Arachis hypogaea HOM05D002786 ORTHO05D003493 1.1e-09 66.2 44 72.7
arahy.Tifrunner.gnm1.ann1.6D1JC0 Arachis hypogaea HOM05D002786 ORTHO05D003493 1.1e-09 66.2 44 72.7
CAN.G710.41 Capsicum annuum HOM05D002786 ORTHO05D003493 1.1e-09 66.2 44 68.2
Gorai.005G017400 Gossypium raimondii HOM05D002786 ORTHO05D003493 1.1e-09 66.2 44 70.5
Lsat_1_v5_gn_4_22540 Lactuca sativa HOM05D002786 ORTHO05D003493 1.1e-09 66.2 44 70.5
HanXRQChr16g0527621 Helianthus annuus HOM05D002786 ORTHO05D003493 1.5e-09 65.9 44 70.5
Duzib151G0845 Durio zibethinus HOM05D002786 ORTHO05D003493 1.9e-09 65.5 44 70.5
Glyma.08G258700 Glycine max HOM05D002786 ORTHO05D003493 1.9e-09 65.5 44 72.7
Gohir.D09G204200 Gossypium hirsutum HOM05D002786 ORTHO05D003493 1.9e-09 65.5 44 68.2
Rhsim09G0037400 Rhododendron simsii HOM05D002786 ORTHO05D003493 1.9e-09 65.5 44 70.5
Lj3C859G10 Lonicera japonica HOM05D002786 ORTHO05D003493 2.5e-09 65.1 44 70.5
CiPaw.02G059800 Carya illinoinensis HOM05D002786 ORTHO05D003493 3.3e-09 64.7 44 72.7
Gohir.A09G210800 Gossypium hirsutum HOM05D002786 ORTHO05D003493 3.3e-09 64.7 44 68.2
Manes.11G114100 Manihot esculenta HOM05D002786 ORTHO05D003493 3.3e-09 64.7 44 68.2
PGR135G0001 Punica granatum HOM05D002786 ORTHO05D003493 3.3e-09 64.7 44 68.2
TWI15G0371 Tripterygium wilfordii HOM05D002786 ORTHO05D003493 3.3e-09 64.7 44 68.2
TWI63G1206 Tripterygium wilfordii HOM05D002786 ORTHO05D003493 3.3e-09 64.7 44 68.2
BcaB02g10406 Brassica carinata HOM05D002786 ORTHO05D003493 4.3e-09 64.3 46 60.9
Thhalv10016172m.g Eutrema salsugineum HOM05D002786 ORTHO05D003493 4.3e-09 64.3 46 60.9
Nn7g37146 Nelumbo nucifera HOM05D002786 ORTHO05D003493 4.3e-09 64.3 44 68.2
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 7.3e-09 63.5 46 60.9
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 7.3e-09 63.5 46 60.9
Duzib268G0977 Durio zibethinus HOM05D002786 ORTHO05D003493 7.3e-09 63.5 44 65.9
Lalb_Chr04g0258061 Lupinus albus HOM05D002786 ORTHO05D003493 7.3e-09 63.5 44 70.5
Prupe.1G180500 Prunus persica HOM05D002786 ORTHO05D003493 7.3e-09 63.5 44 68.2
AL4G26900 Arabidopsis lyrata HOM05D002786 ORTHO05D003493 9.5e-09 63.2 46 60.9
AT2G31660 Arabidopsis thaliana HOM05D002786 ORTHO05D003493 9.5e-09 63.2 46 60.9
Carub.0004s1296 Capsella rubella HOM05D002786 ORTHO05D003493 9.5e-09 63.2 46 60.9
FvH4_4g12200 Fragaria vesca HOM05D002786 ORTHO05D003493 9.5e-09 63.2 44 65.9
FAN12G0646 Fragaria x ananassa HOM05D002786 ORTHO05D003493 9.5e-09 63.2 44 65.9
FAN12G1472 Fragaria x ananassa HOM05D002786 ORTHO05D003493 9.5e-09 63.2 44 65.9
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 9.5e-09 63.2 44 65.9
FAN22G0173 Fragaria x ananassa HOM05D002786 ORTHO05D003493 9.5e-09 63.2 44 65.9
Sp4g14060 Schrenkiella parvula HOM05D002786 ORTHO05D003493 9.5e-09 63.2 46 60.9
Solyc09g098240.4 Solanum lycopersicum HOM05D002786 ORTHO05D003493 9.5e-09 63.2 44 65.9
FAN07G1377 Fragaria x ananassa HOM05D002786 ORTHO05D003493 1.2e-08 62.8 44 65.9
Lj6A731T90 Lonicera japonica HOM05D002786 ORTHO05D003493 1.2e-08 62.8 44 68.2
ClCG08G003770 Citrullus lanatus HOM05D002786 ORTHO05D003493 1.6e-08 62.4 44 63.6
Eucgr.H02619 Eucalyptus grandis HOM05D002786 ORTHO05D003493 1.6e-08 62.4 44 65.9
RcHm_v2.0_Chr4g0409961 Rosa chinensis HOM05D002786 ORTHO05D003493 1.6e-08 62.4 44 68.2
Sed0001099 Sechium edule HOM05D002786 ORTHO05D003493 1.6e-08 62.4 44 63.6
BcaB01g04029 Brassica carinata HOM05D002786 ORTHO05D003493 2.1e-08 62.0 46 58.7
BcaB06g28532 Brassica carinata HOM05D002786 ORTHO05D003493 2.1e-08 62.0 46 58.7
BcaC02g11274 Brassica carinata HOM05D002786 ORTHO05D003493 2.1e-08 62.0 46 58.7
A04p24150 Brassica napus HOM05D002786 ORTHO05D003493 2.1e-08 62.0 46 58.7
A05p13850 Brassica napus HOM05D002786 ORTHO05D003493 2.1e-08 62.0 46 58.7
C04p18220 Brassica napus HOM05D002786 ORTHO05D003493 2.1e-08 62.0 46 58.7
C04p60880 Brassica napus HOM05D002786 ORTHO05D003493 2.1e-08 62.0 46 58.7
BolC4t23379H Brassica oleracea HOM05D002786 ORTHO05D003493 2.1e-08 62.0 46 58.7
BraA04t17935Z Brassica rapa HOM05D002786 ORTHO05D003493 2.1e-08 62.0 46 58.7
BraA05t20321Z Brassica rapa HOM05D002786 ORTHO05D003493 2.1e-08 62.0 46 58.7
Oeu007217.1 Olea europaea HOM05D002786 ORTHO05D003493 2.1e-08 62.0 44 65.9
Peaxi162Scf00378g00635 Petunia axillaris HOM05D002786 ORTHO05D003493 2.1e-08 62.0 44 65.9
TWI38G1748 Tripterygium wilfordii HOM05D002786 ORTHO05D003493 2.1e-08 62.0 42 66.7
Aqoxy2G03945 Aquilegia oxysepala HOM05D002786 ORTHO05D003493 3.6e-08 61.2 44 65.9
BolC4t27579H Brassica oleracea HOM05D002786 ORTHO05D003493 3.6e-08 61.2 46 58.7
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 3.6e-08 61.2 44 68.2
unitig_21.g20553 Utricularia gibba HOM05D002786 ORTHO05D003493 3.6e-08 61.2 44 65.9
CsaV3_1G023100 Cucumis sativus L. HOM05D002786 ORTHO05D003493 4.7e-08 60.8 44 61.4
Sabra02G0177400 Salix brachista HOM05D002786 ORTHO05D003493 4.7e-08 60.8 52 59.6
BcaC01g05937 Brassica carinata HOM05D002786 ORTHO05D003493 6.2e-08 60.5 46 56.5
A03p17820 Brassica napus HOM05D002786 ORTHO05D003493 6.2e-08 60.5 46 56.5
C03p20890 Brassica napus HOM05D002786 ORTHO05D003493 6.2e-08 60.5 46 56.5
BolC3t14469H Brassica oleracea HOM05D002786 ORTHO05D003493 6.2e-08 60.5 46 56.5
BraA03t11046Z Brassica rapa HOM05D002786 ORTHO05D003493 6.2e-08 60.5 46 56.5
CARHR125290 Cardamine hirsuta HOM05D002786 ORTHO05D003493 6.2e-08 60.5 46 58.7
Os04g0337300 Oryza sativa ssp. japonica HOM05D002786 ORTHO05D022444 6.2e-08 60.5 44 63.6
MELO3C010592.2 Cucumis melo HOM05D002786 ORTHO05D003493 8.1e-08 60.1 44 61.4
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 8.1e-08 60.1 44 61.4
Lsat_1_v5_gn_3_105661 Lactuca sativa HOM05D002786 ORTHO05D003493 1.1e-07 59.7 44 63.6
MD04G1028800 Malus domestica HOM05D002786 ORTHO05D003493 1.1e-07 59.7 44 63.6
Sopen09g036180 Solanum pennellii HOM05D002786 ORTHO05D003493 1.1e-07 59.7 44 63.6
HPP92_013645 Vanilla planifolia HOM05D002786 ORTHO05D022444 1.1e-07 59.7 44 61.4
CANSAT78G0453 Cannabis sativa HOM05D002786 ORTHO05D003493 1.4e-07 59.3 44 61.4
MD00G1128300 Malus domestica HOM05D002786 ORTHO05D003493 1.4e-07 59.3 44 63.6
Zm00001eb241000 Zea mays HOM05D002786 ORTHO05D003493 1.4e-07 59.3 44 59.1
Zm00001eb180520 Zea mays HOM05D002786 ORTHO05D003493 1.8e-07 58.9 44 59.1
ECA233G2610 Erigeron canadensis HOM05D002786 ORTHO05D003493 2.4e-07 58.5 44 61.4
MSTRG.21983 Avicennia marina HOM05D002786 ORTHO05D003493 3.1e-07 58.2 44 59.1
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 4.0e-07 57.8 44 61.4
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 8.9e-07 56.6 44 59.1
PSO017G6957 Papaver somniferum HOM05D002786 ORTHO05D003493 8.9e-07 56.6 44 56.8
PSO675G7863 Papaver somniferum HOM05D002786 ORTHO05D003493 8.9e-07 56.6 44 56.8
TAR636G0823 Trochodendron aralioides HOM05D002786 ORTHO05D003493 1.2e-06 56.2 44 59.1
Os02g0474700 Oryza sativa ssp. japonica HOM05D002786 ORTHO05D003493 2.0e-06 55.5 44 54.5
THA.LOC104800912 Tarenaya hassleriana HOM05D002786 ORTHO05D003493 2.0e-06 55.5 44 56.8
ATR0609G059 Amborella trichopoda HOM05D002786 ORTHO05D003493 3.4e-06 54.7 44 56.8
Lsat_1_v5_gn_4_22560 Lactuca sativa HOM05D002786 ORTHO05D003493 3.4e-06 54.7 49 57.1
THA.LOC104815866 Tarenaya hassleriana HOM05D002786 ORTHO05D003493 3.4e-06 54.7 44 59.1
THA.LOC104803420 Tarenaya hassleriana HOM05D002786 ORTHO05D003493 4.4e-06 54.3 44 54.5
DCAR_002652 Daucus carota HOM05D002786 ORTHO05D003493 5.8e-06 53.9 44 59.1
Nitab4.5_0004758g0040 Nicotiana tabacum HOM05D002786 ORTHO05D003493 5.8e-06 53.9 48 52.1
Sabra14G0112800 Salix brachista HOM05D002786 ORTHO05D003493 5.8e-06 53.9 40 62.5
Nitab4.5_0000978g0140 Nicotiana tabacum HOM05D002786 ORTHO05D003493 9.9e-06 53.1 48 47.9


User provided reference genes

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