Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G107201 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 3.1e-36 154.5 70 100.0
Ca_01531_v3 Cicer arietinum L. HOM05D003865 ORTHO05D004466 1.1e-33 146.0 70 92.9
Glyma.13G300400 Glycine max HOM05D003865 ORTHO05D004466 7.2e-33 143.3 70 92.9
Glyma.12G201800 Glycine max HOM05D003865 ORTHO05D004466 1.6e-32 142.1 70 91.4
Lalb_Chr22g0356421 Lupinus albus HOM05D003865 ORTHO05D004466 1.4e-31 139.0 70 84.3
Cc00_g29860 Coffea canephora HOM05D003865 ORTHO05D004466 8.8e-31 136.3 67 86.6
CSS0011087 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.1e-30 136.0 70 82.9
CSS0044246 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.1e-30 136.0 70 82.9
Ciclev10017406m.g Citrus clementina HOM05D003865 ORTHO05D004466 1.5e-30 135.6 68 85.3
TPR.G35550 Trifolium pratense HOM05D003865 ORTHO05D004466 1.5e-30 135.6 70 88.6
Prupe.3G233100 Prunus persica HOM05D003865 ORTHO05D004466 1.9e-30 135.2 68 85.3
EL10Ac9g20679 Beta vulgaris HOM05D003865 ORTHO05D004466 3.3e-30 134.4 67 83.6
CiPaw.04G123400 Carya illinoinensis HOM05D003865 ORTHO05D004466 4.3e-30 134.0 68 83.8
CsaV3_7G004170 Cucumis sativus L. HOM05D003865 ORTHO05D004466 4.3e-30 134.0 68 82.4
Migut.H01032 Erythranthe guttata HOM05D003865 ORTHO05D004466 5.7e-30 133.7 68 82.4
Potri.019G104100 Populus trichocarpa HOM05D003865 ORTHO05D004466 5.7e-30 133.7 67 86.6
Potri.019G104300 Populus trichocarpa HOM05D003865 ORTHO05D004466 5.7e-30 133.7 67 86.6
Sed0011440 Sechium edule HOM05D003865 ORTHO05D004466 7.4e-30 133.3 68 80.9
TWI18G0639 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 7.4e-30 133.3 67 86.6
CANSAT64G1248 Cannabis sativa HOM05D003865 ORTHO05D004466 9.7e-30 132.9 68 83.8
MD09G1091900 Malus domestica HOM05D003865 ORTHO05D004466 9.7e-30 132.9 68 83.8
Cfa014557 Carpinus fangiana HOM05D003865 ORTHO05D004466 1.3e-29 132.5 67 83.6
CiPaw.03G171100 Carya illinoinensis HOM05D003865 ORTHO05D004466 1.3e-29 132.5 68 83.8
Lsat_1_v5_gn_8_131501 Lactuca sativa HOM05D003865 ORTHO05D004466 1.3e-29 132.5 68 80.9
CSS0037327 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.7e-29 132.1 68 82.4
Sed0016537 Sechium edule HOM05D003865 ORTHO05D004466 1.7e-29 132.1 68 80.9
PGSC0003DMG400018392 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.7e-29 132.1 68 82.4
ClCG02G017420 Citrullus lanatus HOM05D003865 ORTHO05D004466 2.2e-29 131.7 68 79.4
Sopen07g028410 Solanum pennellii HOM05D003865 ORTHO05D004466 3.7e-29 131.0 68 80.9
Duzib248G0431 Durio zibethinus HOM05D003865 ORTHO05D004466 4.8e-29 130.6 68 79.4
Gohir.D02G182200 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.8e-29 130.6 68 79.4
Gorai.005G204700 Gossypium raimondii HOM05D003865 ORTHO05D004466 4.8e-29 130.6 68 79.4
TWI36G0902 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 4.8e-29 130.6 68 85.3
GSVIVG01030567001 Vitis vinifera HOM05D003865 ORTHO05D004466 4.8e-29 130.6 69 79.7
Hma1.2p1_0213F.1_g090470 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 6.3e-29 130.2 68 83.8
Lsat_1_v5_gn_8_131640 Lactuca sativa HOM05D003865 ORTHO05D004466 6.3e-29 130.2 67 80.6
Nn1g06711 Nelumbo nucifera HOM05D003865 ORTHO05D004466 6.3e-29 130.2 68 82.4
MELO3C013523.2 Cucumis melo HOM05D003865 ORTHO05D004466 8.2e-29 129.8 68 79.4
TWI75G0545 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 8.2e-29 129.8 68 82.4
Manes.12G087700 Manihot esculenta HOM05D003865 ORTHO05D004466 1.1e-28 129.4 67 82.1
PGR142G1950 Punica granatum HOM05D003865 ORTHO05D004466 1.1e-28 129.4 68 82.4
Solyc07g054470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 1.1e-28 129.4 68 79.4
CANSAT11G1994 Cannabis sativa HOM05D003865 ORTHO05D004466 1.4e-28 129.0 68 79.4
Duzib132G0908 Durio zibethinus HOM05D003865 ORTHO05D004466 1.4e-28 129.0 68 79.4
Eucgr.F01087 Eucalyptus grandis HOM05D003865 ORTHO05D004466 1.4e-28 129.0 68 79.4
MBI18_g32892_MAGBIO Magnolia biondii HOM05D003865 ORTHO05D004466 1.4e-28 129.0 68 82.4
Duzib268G1549 Durio zibethinus HOM05D003865 ORTHO05D004466 1.8e-28 128.6 68 79.4
Hma1.2p1_1143F.1_g261110 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 1.8e-28 128.6 68 79.4
PGR083G1332 Punica granatum HOM05D003865 ORTHO05D004466 2.4e-28 128.3 68 77.9
HanXRQChr17g0554211 Helianthus annuus HOM05D003865 ORTHO05D004466 3.1e-28 127.9 68 79.4
Hma1.2p1_1143F.1_g261120 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 3.1e-28 127.9 68 77.9
Cpa.g.sc34.113 Carica papaya HOM05D003865 ORTHO05D004466 5.3e-28 127.1 67 82.1
COL.COLO4_09463 Corchorus olitorius HOM05D003865 ORTHO05D004466 5.3e-28 127.1 68 76.5
Thecc.07G074300 Theobroma cacao HOM05D003865 ORTHO05D004466 5.3e-28 127.1 68 77.9
MD17G1081800 Malus domestica HOM05D003865 ORTHO05D004466 6.9e-28 126.7 68 82.4
Prupe.4G187900 Prunus persica HOM05D003865 ORTHO05D004466 6.9e-28 126.7 68 76.5
BcaB07g33385 Brassica carinata HOM05D003865 ORTHO05D004466 1.2e-27 125.9 68 76.5
A06p01500 Brassica napus HOM05D003865 ORTHO05D004466 1.2e-27 125.9 68 76.5
BolC6t35932H Brassica oleracea HOM05D003865 ORTHO05D004466 1.2e-27 125.9 68 76.5
BraA06t23371Z Brassica rapa HOM05D003865 ORTHO05D004466 1.2e-27 125.9 68 76.5
Glyma.12G220500 Glycine max HOM05D003865 ORTHO05D004466 1.2e-27 125.9 68 80.9
Sc06g0009210 Simmondsia chinensis HOM05D003865 ORTHO05D004466 1.2e-27 125.9 68 80.9
Eucgr.K00940 Eucalyptus grandis HOM05D003865 ORTHO05D004466 1.5e-27 125.6 68 80.9
Medtr2g090110 Medicago truncatula HOM05D003865 ORTHO05D004466 1.5e-27 125.6 67 85.1
RcHm_v2.0_Chr5g0035051 Rosa chinensis HOM05D003865 ORTHO05D004466 1.5e-27 125.6 68 76.5
HanXRQChr17g0559361 Helianthus annuus HOM05D003865 ORTHO05D004466 2.0e-27 125.2 67 77.6
BcaC08g43469 Brassica carinata HOM05D003865 ORTHO05D004466 2.6e-27 124.8 68 75.0
C06p08510 Brassica napus HOM05D003865 ORTHO05D004466 2.6e-27 124.8 68 75.0
HanXRQChr17g0559351 Helianthus annuus HOM05D003865 ORTHO05D004466 2.6e-27 124.8 67 77.6
Phvul.005G085500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 2.6e-27 124.8 68 77.9
QL08p037564 Quercus lobata HOM05D003865 ORTHO05D004466 2.6e-27 124.8 68 77.9
Lalb_Chr19g0134391 Lupinus albus HOM05D003865 ORTHO05D004466 3.4e-27 124.4 68 76.5
MD11G1238900 Malus domestica HOM05D003865 ORTHO05D004466 3.4e-27 124.4 68 73.5
Cc05_g12570 Coffea canephora HOM05D003865 ORTHO05D004466 5.9e-27 123.6 68 75.0
Lj3g0025843 Lotus japonicus HOM05D003865 ORTHO05D004466 5.9e-27 123.6 68 76.5
Manes.15G084300 Manihot esculenta HOM05D003865 ORTHO05D004466 5.9e-27 123.6 68 76.5
Sopen07g031650 Solanum pennellii HOM05D003865 ORTHO05D004466 5.9e-27 123.6 68 76.5
Glyma.12G148300 Glycine max HOM05D003865 ORTHO05D004466 7.7e-27 123.2 68 76.5
Gorai.009G432200 Gossypium raimondii HOM05D003865 ORTHO05D004466 7.7e-27 123.2 68 75.0
CSS0032128 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.7e-26 122.1 67 82.1
CARHR043080 Cardamine hirsuta HOM05D003865 ORTHO05D004466 1.7e-26 122.1 68 72.1
Thhalv10012262m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 1.7e-26 122.1 68 72.1
Potri.011G124800 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.7e-26 122.1 68 73.5
Solyc07g063470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 1.7e-26 122.1 68 75.0
PGSC0003DMG400019299 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.7e-26 122.1 68 76.5
CSS0035059 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 2.2e-26 121.7 67 76.1
Glyma.06G249600 Glycine max HOM05D003865 ORTHO05D004466 2.2e-26 121.7 68 75.0
Nn1g03940 Nelumbo nucifera HOM05D003865 ORTHO05D004466 2.9e-26 121.3 68 77.9
TWI39G0307 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 2.9e-26 121.3 67 76.1
Carub.0001s4201 Capsella rubella HOM05D003865 ORTHO05D004466 3.8e-26 120.9 68 72.1
MD03G1221400 Malus domestica HOM05D003865 ORTHO05D004466 5.0e-26 120.6 68 73.5
Potri.013G145100 Populus trichocarpa HOM05D003865 ORTHO05D004466 5.0e-26 120.6 67 79.1
THA.LOC109116854 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 5.0e-26 120.6 68 70.6
AT1G52855 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 8.5e-26 119.8 68 72.1
CiPaw.11G174800 Carya illinoinensis HOM05D003865 ORTHO05D004466 8.5e-26 119.8 68 70.6
Gohir.D01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 8.5e-26 119.8 68 76.5
Gorai.002G017300 Gossypium raimondii HOM05D003865 ORTHO05D004466 8.5e-26 119.8 68 76.5
RcHm_v2.0_Chr2g0162101 Rosa chinensis HOM05D003865 ORTHO05D004466 8.5e-26 119.8 67 79.1
Duzib170G0518 Durio zibethinus HOM05D003865 ORTHO05D004466 1.4e-25 119.0 68 75.0
Gohir.A01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.4e-25 119.0 68 76.5
Manes.03G115200 Manihot esculenta HOM05D003865 ORTHO05D004466 1.4e-25 119.0 68 73.5
Potri.001G405400 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.4e-25 119.0 68 73.5
CSS0031855 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.9e-25 118.6 68 70.6
A05p33870 Brassica napus HOM05D003865 ORTHO05D004466 2.5e-25 118.2 68 72.1
BraA01t03904Z Brassica rapa HOM05D003865 ORTHO05D004466 2.5e-25 118.2 68 73.5
Phvul.011G148500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 2.5e-25 118.2 67 76.1
TPR.G32874 Trifolium pratense HOM05D003865 ORTHO05D004466 3.2e-25 117.9 68 75.0
VMungo1127G2113 Vigna mungo HOM05D003865 ORTHO05D004466 3.2e-25 117.9 67 76.1
BcaC05g28963 Brassica carinata HOM05D003865 ORTHO05D004466 4.2e-25 117.5 68 70.6
C05p51570 Brassica napus HOM05D003865 ORTHO05D004466 4.2e-25 117.5 68 70.6
BolC5t33845H Brassica oleracea HOM05D003865 ORTHO05D004466 4.2e-25 117.5 68 70.6
Cfa020526 Carpinus fangiana HOM05D003865 ORTHO05D004466 4.2e-25 117.5 67 73.1
BcaB06g29589 Brassica carinata HOM05D003865 ORTHO05D004466 5.5e-25 117.1 68 72.1
BcaC09g48519 Brassica carinata HOM05D003865 ORTHO05D004466 5.5e-25 117.1 68 72.1
Ciclev10010786m.g Citrus clementina HOM05D003865 ORTHO05D004466 7.2e-25 116.7 68 73.5
Aa31LG8G17640 Aethionema arabicum HOM05D003865 ORTHO05D004466 9.4e-25 116.3 67 73.1
C01p48910 Brassica napus HOM05D003865 ORTHO05D004466 9.4e-25 116.3 67 73.1
BolC1t04854H Brassica oleracea HOM05D003865 ORTHO05D004466 9.4e-25 116.3 67 73.1
AT3G15534 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 1.2e-24 115.9 68 72.1
CSS0016755 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.6e-24 115.5 68 67.6
Thhalv10021922m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 1.6e-24 115.5 68 72.1
Gohir.A01G067400 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.6e-24 115.5 68 73.5
Gohir.D01G054600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.6e-24 115.5 68 73.5
Gorai.002G074500 Gossypium raimondii HOM05D003865 ORTHO05D004466 1.6e-24 115.5 68 73.5
BcaB04g20919 Brassica carinata HOM05D003865 ORTHO05D004466 2.1e-24 115.2 68 70.6
Glyma.13G281000 Glycine max HOM05D003865 ORTHO05D004466 2.7e-24 114.8 68 75.0
Hma1.2p1_1053F.1_g252410 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 2.7e-24 114.8 68 73.5
BcaC06g36774 Brassica carinata HOM05D003865 ORTHO05D004466 3.6e-24 114.4 67 74.6
BolC7t40459H Brassica oleracea HOM05D003865 ORTHO05D004466 3.6e-24 114.4 67 74.6
CARHR090600 Cardamine hirsuta HOM05D003865 ORTHO05D004466 3.6e-24 114.4 68 70.6
HanXRQChr05g0156551 Helianthus annuus HOM05D003865 ORTHO05D004466 3.6e-24 114.4 68 69.1
Carub.0003s1527 Capsella rubella HOM05D003865 ORTHO05D004466 4.7e-24 114.0 68 73.5
BcaC07g41193 Brassica carinata HOM05D003865 ORTHO05D004466 7.9e-24 113.2 67 73.1
C08p41990 Brassica napus HOM05D003865 ORTHO05D004466 7.9e-24 113.2 67 73.1
BolC8t51762H Brassica oleracea HOM05D003865 ORTHO05D004466 7.9e-24 113.2 67 73.1
PGSC0003DMG400025047 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.0e-23 112.8 67 71.6
unitig_0.g2049 Utricularia gibba HOM05D003865 ORTHO05D004466 1.0e-23 112.8 68 67.6
ATR0191G001 Amborella trichopoda HOM05D003865 ORTHO05D004466 1.4e-23 112.5 68 70.6
AL3G54020 Arabidopsis lyrata HOM05D003865 ORTHO05D004466 1.8e-23 112.1 67 71.6
BcaB08g34942 Brassica carinata HOM05D003865 ORTHO05D004466 1.8e-23 112.1 67 71.6
BraA09t41256Z Brassica rapa HOM05D003865 ORTHO05D004466 1.8e-23 112.1 67 71.6
HanXRQChr05g0156511 Helianthus annuus HOM05D003865 ORTHO05D004466 1.8e-23 112.1 68 67.6
Lsat_1_v5_gn_5_7081 Lactuca sativa HOM05D003865 ORTHO05D004466 1.8e-23 112.1 68 69.1
Sp3g34080 Schrenkiella parvula HOM05D003865 ORTHO05D004466 1.8e-23 112.1 67 71.6
Migut.M00867 Erythranthe guttata HOM05D003865 ORTHO05D004466 2.3e-23 111.7 67 70.1
EL10Ac4g08086 Beta vulgaris HOM05D003865 ORTHO05D004466 3.0e-23 111.3 67 68.7
CARHR111560 Cardamine hirsuta HOM05D003865 ORTHO05D004466 3.9e-23 110.9 67 70.1
Carub.0003s3548 Capsella rubella HOM05D003865 ORTHO05D004466 6.7e-23 110.2 67 70.1
Lsat_1_v5_gn_9_85200 Lactuca sativa HOM05D003865 ORTHO05D004466 6.7e-23 110.2 67 68.7
Thhalv10002196m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 8.8e-23 109.8 67 70.1
AT2G20835 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 1.1e-22 109.4 67 70.1
Migut.O00868 Erythranthe guttata HOM05D003865 ORTHO05D004466 2.0e-22 108.6 67 68.7
unitig_899.g15557 Utricularia gibba HOM05D003865 ORTHO05D004466 2.6e-22 108.2 67 67.2
Psat2g056680 Pisum sativum HOM05D003865 ORTHO05D004466 3.3e-22 107.8 68 69.1
Os07g0564200 Oryza sativa ssp. japonica HOM05D003865 ORTHO05D004466 4.4e-22 107.5 70 70.0
Sc03g0009670 Simmondsia chinensis HOM05D003865 ORTHO05D004466 4.4e-22 107.5 68 66.2
Actinidia12448 Actinidia chinensis HOM05D003865 ORTHO05D004466 5.7e-22 107.1 57 84.2
THA.LOC109117138 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 9.7e-22 106.3 67 70.1
Sp1g39430 Schrenkiella parvula HOM05D003865 ORTHO05D004466 2.2e-21 105.1 60 70.0
HanXRQChr08g0235631 Helianthus annuus HOM05D003865 ORTHO05D004466 2.8e-21 104.8 68 63.2
BraA05t22209Z Brassica rapa HOM05D003865 ORTHO05D004466 4.8e-21 104.0 69 66.7
Gohir.A03G159100 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.8e-21 104.0 56 78.6
Zm00001eb324400 Zea mays HOM05D003865 ORTHO05D004466 6.3e-21 103.6 70 67.1
MELO3C016544.2 Cucumis melo HOM05D003865 ORTHO05D004466 8.2e-21 103.2 68 58.8
Peaxi162Scf00007g02826 Petunia axillaris HOM05D003865 ORTHO05D004466 6.9e-20 100.1 56 76.8
A09p58700 Brassica napus HOM05D003865 ORTHO05D004466 5.9e-19 97.1 58 70.7
Sed0025956 Sechium edule HOM05D003865 ORTHO05D004466 1.0e-18 96.3 67 59.7
DCAR_009979 Daucus carota HOM05D003865 ORTHO05D004466 2.9e-18 94.7 55 69.1
CsaV3_3G006060 Cucumis sativus L. HOM05D003865 ORTHO05D004466 6.5e-18 93.6 62 59.7
Manes.13G150400 Manihot esculenta HOM05D003865 ORTHO05D004466 4.2e-17 90.9 48 83.3
DCAR_013078 Daucus carota HOM05D003865 ORTHO05D004466 1.5e-14 82.4 50 66.0
GSVIVG01014413001 Vitis vinifera HOM05D003865 ORTHO05D004466 9.7e-14 79.7 43 81.4
Oeu058398.1 Olea europaea HOM05D003865 ORTHO05D004466 2.2e-13 78.6 41 85.4
Mapoly0067s0090 Marchantia polymorpha HOM05D003865 ORTHO05D004466 3.7e-13 77.8 64 48.4
FAN21G1589 Fragaria x ananassa HOM05D003865 ORTHO05D004466 2.0e-11 72.0 46 69.6
Gohir.D05G360466 Gossypium hirsutum HOM05D003865 ORTHO05D004466 2.2e-10 68.6 41 73.2
C07p00070 Brassica napus HOM05D028728 ORTHO05D033255 2.5e-09 65.1 38 73.7
Pp3c22_11210 Physcomitrium patens HOM05D003865 ORTHO05D004466 5.2e-07 57.4 67 38.8
MELO3C011187.2 Cucumis melo HOM05D002778 ORTHO05D003112 1.2e-06 56.2 59 37.3
Sed0006590 Sechium edule HOM05D002778 ORTHO05D003112 2.6e-06 55.1 59 35.6
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 4.4e-06 54.3 63 31.7
CiPaw.07G212100 Carya illinoinensis HOM05D002778 ORTHO05D003112 5.7e-06 53.9 59 37.3
Eucgr.C02014 Eucalyptus grandis HOM05D002778 ORTHO05D003112 7.5e-06 53.5 64 35.9
QL12p025213 Quercus lobata HOM05D002778 ORTHO05D003112 9.7e-06 53.1 59 35.6
RcHm_v2.0_Chr6g0305041 Rosa chinensis HOM05D002778 ORTHO05D003112 9.7e-06 53.1 59 33.9


User provided reference genes

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