Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 3.1e-295 1017.7 499 100.0
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 1.5e-278 962.2 499 94.8
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 6.2e-264 913.7 497 88.7
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 2.0e-262 908.7 497 89.1
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.2e-174 617.1 511 62.6
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 4.0e-170 602.1 511 59.9
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 5.8e-169 598.2 522 57.3
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 2.2e-168 596.3 494 60.7
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 7.1e-167 591.3 495 61.2
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 6.6e-165 584.7 510 58.2
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 6.6e-165 584.7 510 58.2
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.9e-164 583.2 526 56.7
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 2.5e-164 582.8 507 57.0
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 3.3e-164 582.4 512 57.2
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.3e-164 582.0 510 58.4
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 3.1e-162 575.9 539 55.5
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 2.0e-161 573.2 509 56.8
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 5.8e-161 571.6 535 56.1
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 9.9e-161 570.9 527 55.4
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 9.9e-161 570.9 509 57.2
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 2.2e-160 569.7 524 55.0
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.1e-159 567.4 526 55.7
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.4e-159 567.0 520 56.3
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.2e-158 563.9 527 56.0
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.2e-158 563.9 530 55.1
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.0e-157 560.8 513 56.3
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 2.3e-157 559.7 528 54.4
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.1e-156 557.4 534 54.1
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.5e-156 557.0 523 55.4
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 4.8e-155 552.0 526 54.6
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 1.5e-153 547.0 520 54.4
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 2.6e-153 546.2 520 53.8
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 9.9e-153 544.3 541 52.5
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.7e-152 543.5 514 55.8
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 8.4e-152 541.2 551 52.5
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 6.0e-150 535.0 513 54.6
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 7.9e-150 534.6 512 52.3
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.8e-149 533.5 521 54.7
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 7.4e-148 528.1 548 51.5
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 7.4e-148 528.1 548 51.5
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 2.1e-147 526.6 539 51.0
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 8.1e-147 524.6 512 53.5
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 8.1e-147 524.6 512 51.6
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 4.0e-146 522.3 553 50.3
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.2e-145 520.8 495 54.7
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-145 520.0 546 50.9
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.3e-144 517.3 536 52.2
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 3.8e-144 515.8 509 53.4
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 2.5e-143 513.1 523 52.6
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 5.5e-143 511.9 543 51.6
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 1.5e-140 503.8 522 52.1
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 4.3e-140 502.3 513 49.5
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 7.4e-140 501.5 512 49.8
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.3e-139 500.7 503 53.3
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.6e-139 500.4 522 50.6
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 8.2e-139 498.0 505 52.1
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.5e-137 493.8 521 50.9
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 2.0e-137 493.4 511 50.7
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 2.6e-137 493.0 551 50.3
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 3.4e-137 492.7 519 51.4
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.9e-136 489.6 475 53.9
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 3.8e-136 489.2 516 49.0
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 6.5e-136 488.4 547 49.5
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.1e-135 487.6 521 50.3
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 3.2e-135 486.1 513 50.7
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 7.1e-135 485.0 525 49.0
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 7.1e-135 485.0 521 49.9
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.6e-134 483.8 535 47.5
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 3.5e-134 482.6 519 48.7
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 1.0e-133 481.1 542 47.4
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 3.0e-133 479.6 528 48.7
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 3.9e-133 479.2 528 50.4
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 3.9e-133 479.2 525 48.4
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 5.7e-132 475.3 526 48.7
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 5.7e-132 475.3 521 47.6
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 1.4e-130 470.7 526 47.1
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 2.4e-130 469.9 520 47.1
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 4.1e-130 469.2 542 47.6
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 5.3e-130 468.8 526 47.0
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 4.5e-129 465.7 519 46.2
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.0e-128 464.5 518 45.8
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 2.9e-128 463.0 511 47.7
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 2.9e-128 463.0 517 49.1
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 2.5e-127 459.9 511 47.6
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 2.7e-126 456.4 523 45.1
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 3.6e-126 456.1 510 47.6
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 7.9e-126 454.9 521 44.9
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.4e-125 454.1 545 47.0
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 1.4e-125 454.1 519 45.9
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.8e-125 453.8 511 47.2
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 3.9e-125 452.6 501 48.5
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 5.1e-125 452.2 554 46.0
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.1e-124 451.1 519 45.7
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 1.5e-124 450.7 527 45.9
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 2.0e-124 450.3 519 45.7
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 5.7e-124 448.7 514 46.9
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 6.3e-123 445.3 506 45.7
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 6.3e-123 445.3 539 45.8
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.4e-122 444.1 509 43.8
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 2.4e-122 443.4 520 45.6
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 1.5e-121 440.7 519 45.1
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 2.9e-120 436.4 506 47.4
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 8.8e-117 424.9 504 46.6
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 3.7e-115 419.5 555 42.9
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.2e-110 404.4 468 47.6
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 1.3e-107 394.4 530 41.9
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.2e-105 387.9 468 47.0
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 2.6e-105 386.7 526 40.9
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 2.9e-104 383.3 512 42.0
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.5e-103 380.9 560 39.6
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.5e-103 380.9 529 40.1
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.2e-103 379.4 488 43.6
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.0e-100 370.5 500 43.6
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 2.8e-99 366.7 511 40.1
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 3.0e-93 346.7 402 46.8
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.2e-92 344.7 502 40.8
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-89 334.0 488 40.6
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 2.9e-88 330.1 517 39.1
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 5.7e-84 315.8 476 40.3
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.0e-82 308.9 481 38.0
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-81 307.0 481 37.8
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.3e-80 304.7 550 36.7
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.5e-76 291.2 451 38.6
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.8e-76 289.3 451 38.4
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-72 276.9 504 35.5
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 5.6e-71 272.7 482 33.2
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.4e-60 236.5 371 38.5
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.9e-59 233.0 445 34.8
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.9e-59 233.0 445 34.8
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 9.6e-47 192.2 154 57.8
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 2.8e-46 190.7 303 40.3
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 6.2e-46 189.5 268 42.9
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 6.4e-43 179.5 516 29.5
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 8.4e-43 179.1 143 62.2
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.5e-41 173.7 462 29.0
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 5.6e-39 166.4 434 28.8
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.1e-38 164.5 522 25.3
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.0e-37 160.2 172 47.7
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.6e-36 157.5 398 30.2
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.3e-32 145.2 521 24.8
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 3.7e-30 137.1 477 26.4
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 2.5e-23 114.4 410 24.6
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 4.8e-22 110.2 203 39.4
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.9e-18 98.2 490 21.6
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 2.1e-17 94.7 123 42.3
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 7.9e-17 92.8 83 54.2
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 4.3e-15 87.0 65 60.0
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 3.7e-14 84.0 55 67.3
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 8.2e-14 82.8 56 60.7
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.8e-13 81.6 287 28.2
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 6.9e-13 79.7 130 35.4
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 9.0e-13 79.3 392 23.2
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 6.1e-09 66.6 82 37.8
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.9e-09 66.2 53 52.8
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 5.1e-08 63.5 205 26.8
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 6.7e-08 63.2 205 26.8
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 7.4e-07 59.7 60 40.0


User provided reference genes

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