Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G101800 Phaseolus vulgaris HOM05D001097 ORTHO05D010284 2.7e-55 218.4 106 100.0
Phvul.011G101750 Phaseolus vulgaris HOM05D008168 ORTHO05D010284 1.6e-47 192.6 99 96.0
Phvul.003G149800 Phaseolus vulgaris HOM05D001097 ORTHO05D001009 1.3e-25 119.8 110 61.8
VMungo1215G1905 Vigna mungo HOM05D001097 ORTHO05D001009 1.9e-24 115.9 110 59.1
Glyma.13G093100 Glycine max HOM05D001097 ORTHO05D001009 3.0e-22 108.6 110 54.5
Glyma.17G067400 Glycine max HOM05D001097 ORTHO05D001009 2.5e-21 105.5 110 54.5
Lalb_Chr13g0300431 Lupinus albus HOM05D001097 ORTHO05D001009 1.2e-20 103.2 110 56.4
Psat4g010960 Pisum sativum HOM05D001097 ORTHO05D001009 1.2e-20 103.2 110 51.8
arahy.Tifrunner.gnm1.ann1.M2AJRY Arachis hypogaea HOM05D001097 ORTHO05D001009 3.6e-20 101.7 105 54.3
Medtr4g129070 Medicago truncatula HOM05D001097 ORTHO05D001009 4.7e-20 101.3 112 51.8
arahy.Tifrunner.gnm1.ann1.HDPS7V Arachis hypogaea HOM05D001097 ORTHO05D001009 1.4e-19 99.8 105 53.3
Ca_21192_v3 Cicer arietinum L. HOM05D001097 ORTHO05D001009 3.1e-19 98.6 105 54.3
Lalb_Chr07g0180181 Lupinus albus HOM05D001097 ORTHO05D001009 6.8e-19 97.4 114 50.9
GSVIVG01029102001 Vitis vinifera HOM05D001097 ORTHO05D001009 2.0e-18 95.9 110 46.4
Ca_14203_v3 Cicer arietinum L. HOM05D001097 ORTHO05D001009 1.7e-17 92.8 113 47.8
CiPaw.07G187900 Carya illinoinensis HOM05D001097 ORTHO05D001009 2.2e-17 92.4 112 48.2
Lj4g0006942 Lotus japonicus HOM05D001097 ORTHO05D001009 3.7e-17 91.7 100 51.0
ClCG11G012270 Citrullus lanatus HOM05D001097 ORTHO05D001009 4.9e-17 91.3 115 47.8
Prupe.1G094900 Prunus persica HOM05D001097 ORTHO05D001009 6.4e-17 90.9 116 47.4
Cfa013535 Carpinus fangiana HOM05D001097 ORTHO05D001009 1.4e-16 89.7 114 47.4
CsaV3_2G008260 Cucumis sativus L. HOM05D001097 ORTHO05D001009 1.9e-16 89.4 121 44.6
MELO3C004041.2 Cucumis melo HOM05D001097 ORTHO05D001009 2.4e-16 89.0 121 44.6
MD13G1262800 Malus domestica HOM05D001097 ORTHO05D001009 2.4e-16 89.0 116 46.6
RcHm_v2.0_Chr4g0404101 Rosa chinensis HOM05D001097 ORTHO05D001009 3.2e-16 88.6 111 45.0
Lj6g0023559 Lotus japonicus HOM05D001097 ORTHO05D001009 4.1e-16 88.2 112 42.9
ATR0580G396 Amborella trichopoda HOM05D001097 ORTHO05D001009 5.4e-16 87.8 109 42.2
FvH4_4g08400 Fragaria vesca HOM05D001097 ORTHO05D001009 5.4e-16 87.8 113 46.9
FAN12G1684 Fragaria x ananassa HOM05D001097 ORTHO05D001009 5.4e-16 87.8 113 46.9
MD16G1264500 Malus domestica HOM05D001097 ORTHO05D001009 7.1e-16 87.4 114 44.7
Medtr0026s0160 Medicago truncatula HOM05D001097 ORTHO05D001009 7.1e-16 87.4 107 49.5
CANSAT11G1498 Cannabis sativa HOM05D001097 ORTHO05D001009 1.2e-15 86.7 123 43.9
Ciclev10008147m.g Citrus clementina HOM05D001097 ORTHO05D001009 1.2e-15 86.7 110 46.4
FAN17G0171 Fragaria x ananassa HOM05D001097 ORTHO05D001009 1.2e-15 86.7 113 46.0
FAN22G0226 Fragaria x ananassa HOM05D001097 ORTHO05D001009 1.2e-15 86.7 113 46.0
MBI14_g24283_MAGBIO Magnolia biondii HOM05D001097 ORTHO05D001009 1.2e-15 86.7 109 40.4
FAN07G0239 Fragaria x ananassa HOM05D001097 ORTHO05D001009 1.6e-15 86.3 118 44.9
SEGI_29638 Sequoiadendron giganteum HOM05D001097 ORTHO05D001009 1.6e-15 86.3 104 43.3
TAR383G0805 Trochodendron aralioides HOM05D001097 ORTHO05D001009 2.7e-15 85.5 106 46.2
ClCG06G012980 Citrullus lanatus HOM05D001097 ORTHO05D001009 3.5e-15 85.1 98 44.9
Psat1g023640 Pisum sativum HOM05D001097 ORTHO05D001009 4.6e-15 84.7 110 45.5
TPR.G5342 Trifolium pratense HOM05D001097 ORTHO05D001009 4.6e-15 84.7 56 71.4
MELO3C017511.2 Cucumis melo HOM05D001097 ORTHO05D001009 6.0e-15 84.3 101 44.6
Atru.chr7.560 Acer truncatum HOM05D001097 ORTHO05D001009 7.8e-15 84.0 107 45.8
CsaV3_1G029550 Cucumis sativus L. HOM05D001097 ORTHO05D001009 1.0e-14 83.6 99 46.5
Eucgr.C00196 Eucalyptus grandis HOM05D001097 ORTHO05D001009 1.3e-14 83.2 107 43.0
Sed0027700 Sechium edule HOM05D001097 ORTHO05D001009 1.3e-14 83.2 101 48.5
arahy.Tifrunner.gnm1.ann1.K3ERDD Arachis hypogaea HOM05D001097 ORTHO05D001009 2.3e-14 82.4 105 48.6
CSS0049168 Camellia sinensis var. sinensis HOM05D001097 ORTHO05D001009 3.0e-14 82.0 101 42.6
Potri.018G096700 Populus trichocarpa HOM05D001097 ORTHO05D001009 3.9e-14 81.6 109 42.2
QL02p096127 Quercus lobata HOM05D001097 ORTHO05D001009 3.9e-14 81.6 110 43.6
Sed0001255 Sechium edule HOM05D001097 ORTHO05D001009 3.9e-14 81.6 113 44.2
TPR.G9528 Trifolium pratense HOM05D001097 ORTHO05D001009 5.1e-14 81.3 108 44.4
TWI34G0095 Tripterygium wilfordii HOM05D001097 ORTHO05D001009 5.1e-14 81.3 104 45.2
arahy.Tifrunner.gnm1.ann1.8LQ7VC Arachis hypogaea HOM05D001097 ORTHO05D001009 6.6e-14 80.9 105 45.7
Manes.06G028700 Manihot esculenta HOM05D001097 ORTHO05D001009 8.6e-14 80.5 107 41.1
EL10Ac8g18257 Beta vulgaris HOM05D001097 ORTHO05D001009 1.1e-13 80.1 108 45.4
CiPaw.08G039200 Carya illinoinensis HOM05D001097 ORTHO05D001009 1.5e-13 79.7 106 41.5
SGA_v2.0_scaffold242G44240 Striga asiatica HOM05D001097 ORTHO05D001009 3.3e-13 78.6 112 41.1
Hund26383 Selenicereus undatus HOM05D001097 ORTHO05D001009 4.3e-13 78.2 108 41.7
Nitab4.5_0009771g0010 Nicotiana tabacum HOM05D001097 ORTHO05D001009 7.3e-13 77.4 111 40.5
Sabra18G0083900 Salix brachista HOM05D001097 ORTHO05D001009 7.3e-13 77.4 109 39.4
MBI15_g00657_MAGBIO Magnolia biondii HOM05D001097 ORTHO05D001009 9.5e-13 77.0 103 43.7
Migut.K00265 Erythranthe guttata HOM05D001097 ORTHO05D001009 1.2e-12 76.6 112 37.5
Glyma.06G223900 Glycine max HOM05D001097 ORTHO05D001009 1.2e-12 76.6 104 44.2
Manes.14G150000 Manihot esculenta HOM05D001097 ORTHO05D001009 1.2e-12 76.6 107 41.1
Sc14g0001150 Simmondsia chinensis HOM05D001097 ORTHO05D001009 1.2e-12 76.6 94 46.8
Hma1.2p1_0921F.1_g236650 Hydrangea macrophylla HOM05D001097 ORTHO05D001009 1.6e-12 76.3 109 42.2
Sed0018932 Sechium edule HOM05D001097 ORTHO05D001009 1.6e-12 76.3 104 43.3
Aqoxy7G03182 Aquilegia oxysepala HOM05D001097 ORTHO05D001009 2.1e-12 75.9 111 38.7
PSO063G3238 Papaver somniferum HOM05D001097 ORTHO05D001009 2.1e-12 75.9 110 40.0
Hma1.2p1_0156F.1_g068810 Hydrangea macrophylla HOM05D001097 ORTHO05D001009 2.8e-12 75.5 106 38.7
COL.COLO4_16084 Corchorus olitorius HOM05D001097 ORTHO05D001009 3.6e-12 75.1 115 40.9
Actinidia24019 Actinidia chinensis HOM05D001097 ORTHO05D001009 4.7e-12 74.7 111 39.6
Haze_22139 Corylus avellana HOM05D001097 ORTHO05D001009 4.7e-12 74.7 59 62.7
TWI63G0969 Tripterygium wilfordii HOM05D001097 ORTHO05D001009 4.7e-12 74.7 104 42.3
Dinv41290 Davidia involucrata HOM05D001097 ORTHO05D001009 6.2e-12 74.3 106 40.6
Oeu024858.2 Olea europaea HOM05D001097 ORTHO05D001009 6.2e-12 74.3 114 35.1
Gohir.A13G211400 Gossypium hirsutum HOM05D001097 ORTHO05D001009 8.1e-12 73.9 102 41.2
Duzib150G1091 Durio zibethinus HOM05D001097 ORTHO05D001009 1.1e-11 73.6 118 40.7
Gohir.D13G215400 Gossypium hirsutum HOM05D001097 ORTHO05D001009 1.1e-11 73.6 102 41.2
Gorai.013G245800 Gossypium raimondii HOM05D001097 ORTHO05D001009 1.1e-11 73.6 102 41.2
Potri.006G174700 Populus trichocarpa HOM05D001097 ORTHO05D001009 1.1e-11 73.6 114 42.1
TAR626G0733 Trochodendron aralioides HOM05D001097 ORTHO05D001009 1.1e-11 73.6 103 38.8
Lalb_Chr11g0072361 Lupinus albus HOM05D001097 ORTHO05D001009 1.4e-11 73.2 111 39.6
Duzib187G1922 Durio zibethinus HOM05D001097 ORTHO05D001009 1.8e-11 72.8 110 41.8
Rhsim01G0009300 Rhododendron simsii HOM05D001097 ORTHO05D001009 1.8e-11 72.8 96 38.5
Lsat_1_v5_gn_7_51280 Lactuca sativa HOM05D001097 ORTHO05D001009 2.3e-11 72.4 113 39.8
PSO782G0698 Papaver somniferum HOM05D001097 ORTHO05D001009 2.3e-11 72.4 111 37.8
Sc08g0005590 Simmondsia chinensis HOM05D001097 ORTHO05D001009 2.3e-11 72.4 106 41.5
Migut.J01438 Erythranthe guttata HOM05D001097 ORTHO05D001009 5.2e-11 71.2 110 39.1
Phvul.001G097601 Phaseolus vulgaris HOM05D001097 ORTHO05D010284 5.2e-11 71.2 44 81.8
Sabra06G0133700 Salix brachista HOM05D001097 ORTHO05D001009 6.8e-11 70.9 114 38.6
Thecc.09G163800 Theobroma cacao HOM05D001097 ORTHO05D001009 6.8e-11 70.9 117 38.5
Duzib168G1731 Durio zibethinus HOM05D001097 ORTHO05D001009 8.9e-11 70.5 112 42.0
Solyc06g009270.3 Solanum lycopersicum HOM05D001097 ORTHO05D001009 8.9e-11 70.5 109 37.6
SGA_v2.0_scaffold66G22491 Striga asiatica HOM05D001097 ORTHO05D001009 1.2e-10 70.1 92 39.1
Phvul.009G206200 Phaseolus vulgaris HOM05D001097 ORTHO05D001009 1.5e-10 69.7 116 40.5
Ah.09g229660 Amaranthus hybridus HOM05D001097 ORTHO05D001009 2.0e-10 69.3 104 40.4
CSS0010628 Camellia sinensis var. sinensis HOM05D001097 ORTHO05D001009 2.0e-10 69.3 103 41.7
Cpa.g.sc450.4 Carica papaya HOM05D001097 ORTHO05D001009 2.0e-10 69.3 115 41.7
Nn8g40298 Nelumbo nucifera HOM05D001097 ORTHO05D001009 3.4e-10 68.6 107 38.3
Oeu058833.1 Olea europaea HOM05D001097 ORTHO05D001009 3.4e-10 68.6 105 38.1
Sopen06g004010 Solanum pennellii HOM05D001097 ORTHO05D001009 3.4e-10 68.6 109 37.6
Nn6g31692 Nelumbo nucifera HOM05D001097 ORTHO05D001009 4.4e-10 68.2 103 40.8
HanXRQChr05g0136581 Helianthus annuus HOM05D001097 ORTHO05D001009 5.8e-10 67.8 114 38.6
Rhsim03G0262300 Rhododendron simsii HOM05D001097 ORTHO05D001009 5.8e-10 67.8 93 43.0
BcaC06g36457 Brassica carinata HOM05D001097 ORTHO05D001009 7.6e-10 67.4 107 42.1
C07p04000 Brassica napus HOM05D001097 ORTHO05D001009 7.6e-10 67.4 107 42.1
BolC7t40791H Brassica oleracea HOM05D001097 ORTHO05D001009 7.6e-10 67.4 107 42.1
ECA234G0028 Erigeron canadensis HOM05D001097 ORTHO05D001009 9.9e-10 67.0 115 33.0
ECA236G1890 Erigeron canadensis HOM05D000014 ORTHO05D000093 9.9e-10 67.0 107 38.3
PSO063G4044 Papaver somniferum HOM05D001097 ORTHO05D001009 9.9e-10 67.0 92 43.5
PSO782G0074 Papaver somniferum HOM05D001097 ORTHO05D001009 9.9e-10 67.0 105 41.9
Dinv42766 Davidia involucrata HOM05D001097 ORTHO05D001009 1.3e-09 66.6 105 39.0
Dinv43337 Davidia involucrata HOM05D001097 ORTHO05D001009 1.3e-09 66.6 105 39.0
Peaxi162Scf00297g01024 Petunia axillaris HOM05D001097 ORTHO05D001009 1.3e-09 66.6 97 38.1
SalBow1G5835 Salvia bowleyana HOM05D001097 ORTHO05D001009 1.3e-09 66.6 112 33.0
A07p01870 Brassica napus HOM05D001097 ORTHO05D001009 1.7e-09 66.2 107 41.1
AUR62039981 Chenopodium quinoa HOM05D001097 ORTHO05D001009 1.7e-09 66.2 87 42.5
AUR62040290 Chenopodium quinoa HOM05D001097 ORTHO05D001009 3.8e-09 65.1 88 42.0
BraA07t27988Z Brassica rapa HOM05D001097 ORTHO05D001009 4.9e-09 64.7 107 40.2
HanXRQChr10g0307931 Helianthus annuus HOM05D001097 ORTHO05D001009 4.9e-09 64.7 111 33.3
SHI02962 Sapria himalayana HOM05D001097 ORTHO05D001009 4.9e-09 64.7 107 40.2
VMungo1309G0511 Vigna mungo HOM05D001097 ORTHO05D001009 4.9e-09 64.7 101 42.6
BcaB03g16665 Brassica carinata HOM05D001097 ORTHO05D001009 6.4e-09 64.3 107 40.2
CDE04G1627 Ceratophyllum demersum HOM05D001097 ORTHO05D001009 6.4e-09 64.3 101 33.7
Lj7A469G53 Lonicera japonica HOM05D001097 ORTHO05D001009 6.4e-09 64.3 99 39.4
DCAR_009904 Daucus carota HOM05D001097 ORTHO05D001009 1.1e-08 63.5 94 33.0
Lsat_1_v5_gn_8_65080 Lactuca sativa HOM05D001097 ORTHO05D001009 1.1e-08 63.5 111 35.1
Nitab4.5_0001212g0010 Nicotiana tabacum HOM05D001097 ORTHO05D001009 1.1e-08 63.5 109 34.9
HanXRQChr03g0065011 Helianthus annuus HOM05D001097 ORTHO05D001009 1.4e-08 63.2 105 39.0
Solyc07g006580.3 Solanum lycopersicum HOM05D001097 ORTHO05D001009 1.4e-08 63.2 97 38.1
Sopen07g002660 Solanum pennellii HOM05D001097 ORTHO05D001009 1.4e-08 63.2 97 38.1
THA.LOC104803510 Tarenaya hassleriana HOM05D001097 ORTHO05D001009 1.4e-08 63.2 112 37.5
Aqoxy7G02472 Aquilegia oxysepala HOM05D001097 ORTHO05D001009 1.9e-08 62.8 113 36.3
PGR142G1806 Punica granatum HOM05D001097 ORTHO05D001009 1.9e-08 62.8 96 39.6
Lsat_1_v5_gn_5_87621 Lactuca sativa HOM05D001097 ORTHO05D001009 2.4e-08 62.4 115 30.4
PSO063G1353 Papaver somniferum HOM05D001097 ORTHO05D001009 2.4e-08 62.4 111 36.9
A01p07820 Brassica napus HOM05D001097 ORTHO05D001009 3.2e-08 62.0 110 30.9
BraA01t00726Z Brassica rapa HOM05D001097 ORTHO05D001009 3.2e-08 62.0 110 30.9
DCAR_014713 Daucus carota HOM05D001097 ORTHO05D001009 3.2e-08 62.0 94 33.0
ECA240G0700 Erigeron canadensis HOM05D001097 ORTHO05D001009 3.2e-08 62.0 109 33.0
Thhalv10025025m.g Eutrema salsugineum HOM05D001097 ORTHO05D001009 3.2e-08 62.0 121 36.4
BcaNung02997 Brassica carinata HOM05D001097 ORTHO05D001009 4.1e-08 61.6 117 35.0
Zm00001eb257410 Zea mays HOM05D001097 ORTHO05D001009 4.1e-08 61.6 98 37.8
unitig_62.g23495 Utricularia gibba HOM05D001097 ORTHO05D001009 5.4e-08 61.2 96 34.4
BcaC09g51816 Brassica carinata HOM05D001097 ORTHO05D001009 7.1e-08 60.8 109 31.2
C01p08720 Brassica napus HOM05D001097 ORTHO05D001009 7.1e-08 60.8 109 31.2
BolC1t00859H Brassica oleracea HOM05D001097 ORTHO05D001009 7.1e-08 60.8 109 31.2
Gorai.009G007300 Gossypium raimondii HOM05D001097 ORTHO05D001009 7.1e-08 60.8 96 39.6
THA.LOC104819982 Tarenaya hassleriana HOM05D001097 ORTHO05D001009 9.2e-08 60.5 119 37.8
Thhalv10022666m.g Eutrema salsugineum HOM05D001097 ORTHO05D001009 1.2e-07 60.1 107 37.4
Nitab4.5_0000244g0080 Nicotiana tabacum HOM05D001097 ORTHO05D001009 1.6e-07 59.7 109 34.9
BcaC04g22887 Brassica carinata HOM05D001097 ORTHO05D001009 2.1e-07 59.3 107 36.4
C09p14200 Brassica napus HOM05D001097 ORTHO05D001009 2.1e-07 59.3 107 36.4
BolC9t54318H Brassica oleracea HOM05D001097 ORTHO05D001009 2.1e-07 59.3 107 36.4
BraA09t36849Z Brassica rapa HOM05D001097 ORTHO05D001009 2.1e-07 59.3 107 36.4
Sp3g32220 Schrenkiella parvula HOM05D001097 ORTHO05D001009 2.1e-07 59.3 107 37.4
PSO782G4990 Papaver somniferum HOM05D001097 ORTHO05D001009 2.7e-07 58.9 111 35.1
BcaB07g31646 Brassica carinata HOM05D001097 ORTHO05D001009 4.6e-07 58.2 107 36.4
CARHR109320 Cardamine hirsuta HOM05D001097 ORTHO05D001009 4.6e-07 58.2 107 36.4
CARHR238240 Cardamine hirsuta HOM05D001097 ORTHO05D001009 4.6e-07 58.2 121 34.7
HPP92_021955 Vanilla planifolia HOM05D001097 ORTHO05D001009 6.0e-07 57.8 100 35.0
AL3G52120 Arabidopsis lyrata HOM05D001097 ORTHO05D001009 7.8e-07 57.4 115 35.7
AT4G30340 Arabidopsis thaliana HOM05D001097 ORTHO05D001009 7.8e-07 57.4 113 34.5
Sp7g28210 Schrenkiella parvula HOM05D001097 ORTHO05D001009 1.3e-06 56.6 121 34.7
AT2G18730 Arabidopsis thaliana HOM05D001097 ORTHO05D001009 1.7e-06 56.2 115 35.7
Carub.0003s3300 Capsella rubella HOM05D001097 ORTHO05D001009 1.7e-06 56.2 115 34.8
AL7G21810 Arabidopsis lyrata HOM05D001097 ORTHO05D001009 2.3e-06 55.8 116 34.5
Actinidia04114 Actinidia chinensis HOM05D001097 ORTHO05D001009 3.0e-06 55.5 51 41.2
RhsimUnG0134800 Rhododendron simsii HOM05D001097 ORTHO05D001009 3.0e-06 55.5 97 38.1
Gohir.D05G007200 Gossypium hirsutum HOM05D001097 ORTHO05D001009 3.9e-06 55.1 92 39.1
Peaxi162Scf00942g00312 Petunia axillaris HOM05D001097 ORTHO05D001009 3.9e-06 55.1 93 35.5
Aa31LG8G15850 Aethionema arabicum HOM05D001097 ORTHO05D001009 5.1e-06 54.7 118 35.6
unitig_52.g17561 Utricularia gibba HOM05D001097 ORTHO05D001009 5.1e-06 54.7 97 35.1
AT5G57690 Arabidopsis thaliana HOM05D001097 ORTHO05D001009 6.6e-06 54.3 113 31.9
Aa31LG2G20200 Aethionema arabicum HOM05D001097 ORTHO05D001009 8.6e-06 53.9 111 33.3


User provided reference genes

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