Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 2.3e-102 375.6 186 100.0
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 5.6e-101 370.9 184 99.5
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 7.1e-88 327.4 185 89.7
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 2.0e-74 282.7 184 75.5
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 2.6e-74 282.3 185 75.1
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 4.5e-74 281.6 184 76.6
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 9.7e-69 263.8 180 75.0
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 1.3e-65 253.4 186 72.0
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 1.7e-65 253.1 184 72.3
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 2.2e-65 252.7 185 71.9
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 2.5e-61 239.2 185 63.2
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 4.5e-58 228.4 184 60.9
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 2.9e-57 225.7 185 61.6
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 2.5e-56 222.6 184 59.2
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 4.2e-56 221.9 179 64.2
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 5.5e-56 221.5 182 67.6
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 1.0e-54 217.2 185 59.5
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 1.0e-54 217.2 186 61.3
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 4.4e-53 211.8 185 60.5
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 4.4e-53 211.8 172 61.6
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 5.7e-53 211.5 185 60.0
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 9.7e-53 210.7 185 60.5
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 3.7e-52 208.8 165 64.8
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 6.3e-52 208.0 185 60.5
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 2.4e-51 206.1 158 64.6
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 3.1e-51 205.7 185 58.9
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 3.1e-51 205.7 157 66.2
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 5.3e-51 204.9 184 58.7
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 5.3e-51 204.9 158 65.2
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 9.1e-51 204.1 158 65.2
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 1.2e-50 203.8 159 64.2
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 3.5e-50 202.2 157 65.6
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 1.0e-49 200.7 159 62.9
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 1.0e-49 200.7 185 56.8
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 1.3e-49 200.3 185 56.8
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.7e-49 199.9 158 64.6
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 5.0e-49 198.4 180 55.0
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.1e-48 197.2 152 64.5
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 4.2e-48 195.3 185 54.6
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 5.5e-48 194.9 185 54.1
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 7.2e-48 194.5 184 54.9
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 9.4e-48 194.1 184 54.3
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 1.6e-47 193.4 186 57.0
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 2.1e-47 193.0 186 54.3
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 2.1e-47 193.0 185 56.2
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 2.7e-47 192.6 185 54.1
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 3.6e-47 192.2 170 59.4
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 6.1e-47 191.4 185 53.5
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 6.1e-47 191.4 185 53.5
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 6.1e-47 191.4 185 53.5
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 6.1e-47 191.4 159 61.6
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 1.0e-46 190.7 185 54.1
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 1.4e-46 190.3 174 61.5
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 2.3e-46 189.5 183 57.4
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 3.0e-46 189.1 165 60.6
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 5.2e-46 188.3 174 59.2
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 8.8e-46 187.6 166 58.4
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 1.1e-45 187.2 181 54.1
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 1.1e-45 187.2 166 58.4
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 4.4e-45 185.3 187 54.0
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 4.4e-45 185.3 176 55.1
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 2.8e-44 182.6 160 58.1
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 8.2e-44 181.0 167 56.9
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 1.1e-43 180.6 160 56.9
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 1.8e-43 179.9 167 56.3
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 3.1e-43 179.1 160 55.6
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 4.1e-43 178.7 160 58.8
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 4.1e-43 178.7 164 56.7
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 4.1e-43 178.7 164 56.7
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 4.1e-43 178.7 164 56.7
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 9.1e-43 177.6 185 51.9
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 1.2e-42 177.2 152 57.9
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 1.6e-42 176.8 185 50.8
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.0e-42 176.4 185 51.4
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 2.0e-42 176.4 192 51.6
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 2.6e-42 176.0 176 53.4
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 5.9e-42 174.9 153 58.2
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 1.3e-41 173.7 152 55.9
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 2.2e-41 172.9 176 52.8
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 3.8e-41 172.2 167 52.1
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 8.5e-41 171.0 187 50.3
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 1.5e-40 170.2 173 52.0
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 1.9e-40 169.9 162 51.9
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 3.2e-40 169.1 165 53.9
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 2.7e-39 166.0 171 52.0
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 6.1e-39 164.9 171 50.9
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 5.2e-38 161.8 156 52.6
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 2.0e-37 159.8 171 52.0
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 2.6e-37 159.5 151 51.0
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 9.7e-37 157.5 175 48.6
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 4.1e-35 152.1 177 52.5
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 1.9e-32 143.3 177 46.3
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 2.6e-29 132.9 155 47.7
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 2.4e-27 126.3 157 46.5
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 5.0e-25 118.6 182 41.2
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 3.3e-24 115.9 129 53.5
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 2.7e-18 96.3 72 62.5
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 8.6e-09 64.7 73 50.7


User provided reference genes

Program Settings