Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 0.0e+00 1078.9 546 100.0
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 2.8e-286 988.0 546 91.2
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 3.6e-281 971.1 545 89.2
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 3.6e-281 971.1 545 89.2
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 7.8e-252 873.6 548 78.5
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.8e-248 862.4 555 79.5
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 6.0e-244 847.4 548 77.9
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 2.4e-240 835.5 553 77.8
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 9.0e-240 833.6 549 76.3
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 5.6e-234 814.3 550 73.8
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 3.9e-227 791.6 552 72.6
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.1e-217 759.2 550 68.2
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-216 756.9 549 68.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-216 756.9 550 68.0
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-216 756.9 549 68.3
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 7.7e-207 724.2 549 65.2
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 8.5e-206 720.7 557 65.4
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.4e-205 719.9 558 64.7
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.4e-203 713.4 544 68.0
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 3.3e-202 708.8 547 66.4
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.3e-201 706.8 550 65.6
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.2e-201 706.1 558 66.1
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 2.8e-201 705.7 572 62.4
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.4e-200 703.4 547 65.1
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.4e-200 702.6 546 65.6
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 4.5e-199 698.4 550 64.5
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.0e-198 697.2 552 64.7
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 1.3e-198 696.8 550 64.4
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 5.0e-198 694.9 544 64.7
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 5.5e-197 691.4 552 64.3
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 5.5e-197 691.4 549 64.8
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 3.6e-196 688.7 554 63.4
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 2.3e-195 686.0 546 63.6
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.0e-194 682.9 550 64.2
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 2.2e-193 679.5 551 64.2
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 2.2e-193 679.5 554 64.3
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.8e-193 679.1 557 63.9
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.4e-192 676.8 566 61.0
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 3.1e-192 675.6 554 63.5
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.6e-191 672.5 558 61.3
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 3.8e-190 668.7 539 64.2
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.0e-190 668.3 549 61.2
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 6.5e-190 667.9 560 62.1
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.0e-187 660.6 549 63.2
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 2.3e-187 659.4 560 60.9
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.3e-187 659.4 566 59.9
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 4.0e-187 658.7 551 63.2
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 6.7e-187 657.9 556 63.1
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 8.8e-187 657.5 555 60.9
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 7.5e-186 654.4 564 60.5
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 9.7e-186 654.1 549 62.5
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.3e-185 653.7 566 61.0
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 8.2e-185 651.0 546 61.2
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.1e-184 650.6 543 62.6
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.1e-184 650.6 560 59.8
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.4e-184 650.2 560 59.8
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.3e-184 648.3 550 62.9
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 3.5e-183 645.6 545 60.4
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 4.5e-183 645.2 541 62.3
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 5.9e-183 644.8 564 59.6
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.5e-182 641.3 521 63.7
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 7.2e-181 637.9 564 59.2
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 9.4e-181 637.5 547 60.1
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 9.4e-181 637.5 558 61.6
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.6e-180 636.7 566 61.0
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.6e-180 636.7 563 60.7
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 8.0e-180 634.4 566 60.4
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.4e-179 633.6 506 65.2
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.4e-179 633.6 495 65.1
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 1.8e-179 633.3 567 61.4
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.8e-179 633.3 546 59.9
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 2.3e-179 632.9 565 59.1
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.3e-179 632.9 572 58.4
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.0e-179 632.5 567 59.1
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 5.2e-179 631.7 566 60.4
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 8.8e-179 630.9 546 59.3
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-178 630.6 565 60.0
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 1.2e-178 630.6 565 60.0
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.5e-178 630.2 565 60.4
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.5e-178 630.2 566 61.0
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.5e-178 630.2 549 59.9
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 5.7e-178 628.2 553 60.8
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.7e-177 625.5 551 58.6
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 4.8e-177 625.2 566 60.4
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.4e-176 623.6 548 61.1
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.4e-176 622.9 565 58.6
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 5.4e-176 621.7 549 60.1
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 2.0e-175 619.8 548 60.8
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 2.7e-175 619.4 562 60.3
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 3.5e-175 619.0 549 60.1
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 7.7e-175 617.8 463 66.1
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.2e-174 616.3 412 71.4
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 3.8e-174 615.5 568 58.3
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 6.5e-174 614.8 553 59.5
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.5e-174 614.8 576 56.6
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.9e-173 613.2 562 60.1
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 9.5e-173 610.9 565 59.3
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 3.6e-172 609.0 548 59.7
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 1.2e-170 604.0 559 57.4
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.5e-170 603.6 558 56.6
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 4.4e-170 602.1 561 56.7
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 9.8e-170 600.9 561 55.8
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 3.7e-169 599.0 563 58.8
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.6e-167 593.6 564 58.0
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 2.0e-167 593.2 558 57.7
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 5.0e-166 588.6 560 57.7
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 3.4e-162 575.9 559 58.1
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 4.4e-162 575.5 453 64.0
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 2.0e-159 566.6 579 52.2
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 2.7e-159 566.2 445 64.7
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 6.8e-155 551.6 557 56.0
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 2.0e-154 550.1 526 58.2
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 2.0e-154 550.1 556 54.5
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 7.5e-154 548.1 562 53.9
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.7e-153 547.0 559 53.8
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 2.7e-151 539.7 402 67.4
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 3.0e-150 536.2 551 52.5
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 5.6e-149 531.9 384 68.8
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.1e-147 527.7 499 56.1
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 5.6e-141 505.4 337 71.8
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 7.6e-138 495.0 554 52.0
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.1e-136 491.1 534 52.1
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 4.9e-129 465.7 555 48.3
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.5e-125 453.4 301 72.8
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.4e-115 421.0 442 45.2
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.3e-113 414.5 468 52.4
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 2.3e-110 403.7 390 55.4
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 3.8e-97 359.8 485 46.8
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.2e-92 344.0 377 43.5
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.7e-84 317.8 190 75.8
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 9.1e-83 312.0 325 54.8
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.5e-82 311.2 369 46.3
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.6e-82 310.5 282 57.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.6e-79 301.2 210 67.1
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 5.9e-74 282.7 356 45.2
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.1e-67 260.4 155 77.4
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 3.1e-51 207.2 199 54.8
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 4.0e-46 190.3 277 45.8
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 1.1e-43 182.2 225 50.2
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 3.0e-41 174.1 285 41.1
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.2e-37 162.2 179 51.4
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 2.0e-29 134.8 470 25.3
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 3.7e-28 130.6 96 61.5
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 4.1e-27 127.1 92 62.0
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.9e-19 101.7 78 60.3
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 3.5e-18 97.4 74 59.5
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 7.8e-18 96.3 70 61.4
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.3e-17 94.7 70 60.0
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 2.5e-16 91.3 115 41.7
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.3e-16 90.9 151 42.4
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.6e-16 90.1 180 28.9
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 2.9e-12 77.8 51 70.6
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 1.3e-09 68.9 73 45.2
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.7e-09 68.6 75 50.7
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 3.3e-08 64.3 116 44.0
Nitab4.5_0003733g0050 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.8e-06 58.5 44 61.4
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 4.0e-06 57.4 58 53.4


User provided reference genes

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