Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 8.8e-54 213.4 109 100.0
VMungo1080G1564 Vigna mungo HOM05D003841 ORTHO05D004602 2.7e-26 122.1 121 61.2
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 2.9e-17 92.0 76 63.2
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 5.0e-17 91.3 74 63.5
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 1.0e-14 83.6 74 58.1
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 4.4e-13 78.2 109 42.2
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 5.8e-13 77.8 68 52.9
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 7.5e-13 77.4 108 42.6
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 2.9e-12 75.5 83 45.8
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 2.9e-12 75.5 83 45.8
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 3.7e-12 75.1 65 52.3
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 3.7e-12 75.1 73 53.4
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 4.9e-12 74.7 83 45.8
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.4e-11 73.2 72 48.6
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 1.4e-11 73.2 78 50.0
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 1.4e-11 73.2 74 48.6
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 2.4e-11 72.4 55 54.5
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 2.4e-11 72.4 81 49.4
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 2.4e-11 72.4 78 44.9
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 4.1e-11 71.6 72 47.2
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 5.4e-11 71.2 67 52.2
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 5.4e-11 71.2 72 48.6
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 1.6e-10 69.7 72 47.2
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 1.6e-10 69.7 72 47.2
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 1.6e-10 69.7 72 47.2
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 4.6e-10 68.2 75 49.3
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 4.6e-10 68.2 69 52.2
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 6.0e-10 67.8 104 41.3
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 6.0e-10 67.8 54 55.6
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 7.8e-10 67.4 84 41.7
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 7.8e-10 67.4 82 46.3
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.0e-09 67.0 78 44.9
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 1.0e-09 67.0 57 54.4
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 1.3e-09 66.6 78 43.6
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 3.0e-09 65.5 84 42.9
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.0e-09 65.5 56 51.8
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 3.9e-09 65.1 87 43.7
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.9e-09 65.1 84 40.5
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 5.0e-09 64.7 75 46.7
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 5.0e-09 64.7 80 43.8
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 6.6e-09 64.3 72 47.2
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 6.6e-09 64.3 79 45.6
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 8.6e-09 63.9 70 44.3
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 8.6e-09 63.9 84 39.3
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 8.6e-09 63.9 84 39.3
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 8.6e-09 63.9 84 39.3
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.6e-09 63.9 83 44.6
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 8.6e-09 63.9 55 50.9
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.5e-08 63.2 63 49.2
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 1.5e-08 63.2 75 42.7
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.5e-08 63.2 64 48.4
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 2.5e-08 62.4 62 48.4
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 3.3e-08 62.0 99 38.4
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 3.3e-08 62.0 72 41.7
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 4.3e-08 61.6 53 54.7
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 4.3e-08 61.6 59 49.2
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 4.3e-08 61.6 54 46.3
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 5.6e-08 61.2 61 41.0
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 5.6e-08 61.2 67 44.8
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 7.3e-08 60.8 54 50.0
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 7.3e-08 60.8 44 59.1
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 9.5e-08 60.5 62 41.9
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 9.5e-08 60.5 110 36.4
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 9.5e-08 60.5 69 43.5
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 1.2e-07 60.1 75 41.3
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 1.6e-07 59.7 76 36.8
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 1.6e-07 59.7 76 43.4
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 1.6e-07 59.7 46 56.5
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.1e-07 59.3 48 50.0
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.1e-07 59.3 99 35.4
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 2.1e-07 59.3 56 48.2
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.1e-07 59.3 83 42.2
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.1e-07 59.3 83 42.2
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 2.1e-07 59.3 46 54.3
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.8e-07 58.9 72 38.9
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 2.8e-07 58.9 60 45.0
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 2.8e-07 58.9 56 50.0
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 2.8e-07 58.9 93 37.6
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 2.8e-07 58.9 94 39.4
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 3.6e-07 58.5 65 43.1
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 3.6e-07 58.5 55 47.3
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 3.6e-07 58.5 49 51.0
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 3.6e-07 58.5 56 48.2
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.6e-07 58.5 64 45.3
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.6e-07 58.5 64 45.3
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 4.7e-07 58.2 51 49.0
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 4.7e-07 58.2 51 49.0
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 6.2e-07 57.8 86 43.0
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 6.2e-07 57.8 105 37.1
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 6.2e-07 57.8 58 44.8
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 6.2e-07 57.8 62 41.9
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 8.0e-07 57.4 50 58.0
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.0e-07 57.4 70 42.9
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.0e-07 57.4 70 42.9
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 8.0e-07 57.4 70 42.9
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.1e-06 57.0 61 42.6
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.4e-06 56.6 62 41.9
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 1.4e-06 56.6 53 47.2
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 1.8e-06 56.2 50 58.0
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.8e-06 56.2 69 43.5
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 1.8e-06 56.2 49 49.0
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 1.8e-06 56.2 59 44.1
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 1.8e-06 56.2 54 48.1
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 1.8e-06 56.2 53 47.2
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 2.3e-06 55.8 55 43.6
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 2.3e-06 55.8 41 53.7
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.3e-06 55.8 109 35.8
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 2.3e-06 55.8 50 50.0
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 2.3e-06 55.8 50 50.0
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.3e-06 55.8 67 44.8
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 3.1e-06 55.5 74 37.8
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 3.1e-06 55.5 62 45.2
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 3.1e-06 55.5 82 36.6
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 3.1e-06 55.5 106 37.7
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 4.0e-06 55.1 65 38.5
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 4.0e-06 55.1 50 48.0
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 5.2e-06 54.7 103 30.1
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.2e-06 54.7 68 44.1
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 5.2e-06 54.7 68 44.1
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 5.2e-06 54.7 93 35.5
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 6.8e-06 54.3 56 42.9
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 8.9e-06 53.9 65 43.1
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 8.9e-06 53.9 59 40.7


User provided reference genes

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