Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5U23EP Arachis hypogaea HOM05D006320 ORTHO05D007069 4.4e-28 127.5 75 100.0
arahy.Tifrunner.gnm1.ann1.YTYD5C Arachis hypogaea HOM05D006320 ORTHO05D007069 4.4e-28 127.5 75 100.0
Lalb_Chr00c24g0406831 Lupinus albus HOM05D006320 ORTHO05D007069 4.4e-28 127.5 75 100.0
Lalb_Chr11g0070071 Lupinus albus HOM05D006320 ORTHO05D007069 4.4e-28 127.5 75 100.0
Phvul.005G088454 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 4.4e-28 127.5 75 100.0
LjContig00439g0017906 Lotus japonicus HOM05D006320 ORTHO05D007069 6.3e-27 123.6 75 97.3
LjContig00446g0026709 Lotus japonicus HOM05D006320 ORTHO05D007069 6.3e-27 123.6 75 97.3
Sed0021840 Sechium edule HOM05D006320 ORTHO05D007069 8.2e-27 123.2 74 97.3
CsaV3_UNG209120 Cucumis sativus L. HOM05D006320 ORTHO05D007069 1.4e-26 122.5 74 97.3
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 1.4e-26 122.5 74 97.3
PGR028G0009 Punica granatum HOM05D006320 ORTHO05D007069 1.8e-26 122.1 74 97.3
Phvul.011G124000 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 2.4e-26 121.7 74 95.9
Ah.10g028420 Amaranthus hybridus HOM05D006320 ORTHO05D007069 4.1e-26 120.9 74 95.9
CARHR287930 Cardamine hirsuta HOM05D006320 ORTHO05D007069 4.1e-26 120.9 75 96.0
AL5G20340 Arabidopsis lyrata HOM05D006320 ORTHO05D007069 5.3e-26 120.6 75 94.7
AT2G07671 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 5.3e-26 120.6 75 94.7
ATMG01080 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 5.3e-26 120.6 75 94.7
BolSC28t60384H Brassica oleracea HOM05D006320 ORTHO05D007069 5.3e-26 120.6 75 94.7
BolSC28t60392H Brassica oleracea HOM05D006320 ORTHO05D007069 5.3e-26 120.6 75 94.7
BolSC28t60418H Brassica oleracea HOM05D006320 ORTHO05D007069 5.3e-26 120.6 75 94.7
BraSC224t45817Z Brassica rapa HOM05D006320 ORTHO05D007069 5.3e-26 120.6 75 94.7
Thhalv10023008m.g Eutrema salsugineum HOM05D006320 ORTHO05D007069 5.3e-26 120.6 75 94.7
Aqoxy12s033 Aquilegia oxysepala HOM05D006320 ORTHO05D007069 1.2e-25 119.4 75 93.3
arahy.Tifrunner.gnm1.ann1.XSHW5Z Arachis hypogaea HOM05D006320 ORTHO05D007069 1.2e-25 119.4 68 100.0
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 1.5e-25 119.0 72 95.8
SalBow1G1899 Salvia bowleyana HOM05D006320 ORTHO05D007069 1.5e-25 119.0 75 94.7
RcHm_v2.0_MTg0498361 Rosa chinensis HOM05D006320 ORTHO05D007069 3.5e-25 117.9 74 93.2
SHI40315 Sapria himalayana HOM05D006320 ORTHO05D007069 3.5e-25 117.9 75 93.3
Hma1.2p1_1191F.1_g265490 Hydrangea macrophylla HOM05D006320 ORTHO05D007069 4.5e-25 117.5 74 94.6
Lalb_Chr10g0093911 Lupinus albus HOM05D006320 ORTHO05D007069 4.5e-25 117.5 75 93.3
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 1.7e-24 115.5 74 93.2
SHI36586 Sapria himalayana HOM05D000743 ORTHO05D000580 2.9e-24 114.8 74 89.2
SHI36772 Sapria himalayana HOM05D000743 ORTHO05D000580 3.8e-24 114.4 74 90.5
SHI36783 Sapria himalayana HOM05D000743 ORTHO05D000580 3.8e-24 114.4 74 90.5
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 5.0e-24 114.0 71 93.0
BolC1t03457H Brassica oleracea HOM05D006320 ORTHO05D007069 5.0e-24 114.0 71 93.0
Aa31sc483G20 Aethionema arabicum HOM05D006320 ORTHO05D007069 6.5e-24 113.6 75 93.3
Gohir.D07G024400 Gossypium hirsutum HOM05D006320 ORTHO05D007069 1.1e-23 112.8 67 97.0
SHI46272 Sapria himalayana HOM05D000743 ORTHO05D000580 1.4e-23 112.5 74 87.8
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 2.5e-23 111.7 72 90.3
CANSAT16G0023 Cannabis sativa HOM05D006320 ORTHO05D007069 2.5e-23 111.7 74 90.5
Psat1g120760 Pisum sativum HOM05D012609 ORTHO05D007069 2.5e-23 111.7 67 95.5
SHI36018 Sapria himalayana HOM05D000743 ORTHO05D000580 4.2e-23 110.9 74 87.8
CDE02G4101 Ceratophyllum demersum HOM05D006320 ORTHO05D007069 5.5e-23 110.5 74 90.5
SHI39988 Sapria himalayana HOM05D006320 ORTHO05D007069 5.5e-23 110.5 72 91.7
SHI54307 Sapria himalayana HOM05D006320 ORTHO05D007069 5.5e-23 110.5 72 91.7
Sc08g0004920 Simmondsia chinensis HOM05D006320 ORTHO05D007069 5.5e-23 110.5 74 89.2
Nitab4.5_0002326g0030 Nicotiana tabacum HOM05D006320 ORTHO05D007069 7.2e-23 110.2 74 87.8
SHI39753 Sapria himalayana HOM05D006320 ORTHO05D007069 7.2e-23 110.2 72 91.7
Nitab4.5_0000172g0580 Nicotiana tabacum HOM05D006320 ORTHO05D007069 9.4e-23 109.8 74 87.8
SHI35484 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-22 109.0 72 91.7
SHI38846 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-22 109.0 72 88.9
SHI15099 Sapria himalayana HOM05D006320 ORTHO05D007069 2.1e-22 108.6 68 94.1
SHI37011 Sapria himalayana HOM05D000743 ORTHO05D000580 2.1e-22 108.6 74 85.1
SHI48649 Sapria himalayana HOM05D006320 ORTHO05D007069 2.1e-22 108.6 72 90.3
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 2.7e-22 108.2 74 89.2
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 2.7e-22 108.2 74 89.2
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 3.6e-22 107.8 70 91.4
RhsimMtG0004200 Rhododendron simsii HOM05D006320 ORTHO05D007069 3.6e-22 107.8 74 87.8
SHI36936 Sapria himalayana HOM05D000743 ORTHO05D000580 3.6e-22 107.8 74 85.1
SHI35237 Sapria himalayana HOM05D006320 ORTHO05D007069 4.7e-22 107.5 72 88.9
SHI46360 Sapria himalayana HOM05D006320 ORTHO05D007069 4.7e-22 107.5 72 88.9
GSVIVG01029662001 Vitis vinifera HOM05D006320 ORTHO05D007069 4.7e-22 107.5 70 90.0
SHI53429 Sapria himalayana HOM05D006320 ORTHO05D007069 6.1e-22 107.1 72 90.3
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 1.4e-21 105.9 73 86.3
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 1.4e-21 105.9 71 85.9
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.8e-21 105.5 74 86.5
ECA234G4202 Erigeron canadensis HOM05D006320 ORTHO05D007069 1.8e-21 105.5 74 86.5
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 1.8e-21 105.5 74 86.5
Lsat_1_v5_gn_8_111781 Lactuca sativa HOM05D006320 ORTHO05D007069 1.8e-21 105.5 74 86.5
SHI34615 Sapria himalayana HOM05D000743 ORTHO05D000580 3.9e-21 104.4 74 82.4
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 3.9e-21 104.4 67 88.1
SHI37852 Sapria himalayana HOM05D006320 ORTHO05D007069 5.2e-21 104.0 75 85.3
SHI53047 Sapria himalayana HOM05D006320 ORTHO05D007069 5.2e-21 104.0 72 87.5
Sopen12g013690 Solanum pennellii HOM05D006320 ORTHO05D007069 1.5e-20 102.4 74 85.1
PGSC0003DMG400002202 Solanum tuberosum HOM05D006320 ORTHO05D007069 1.5e-20 102.4 67 91.0
SalBow6G3944 Salvia bowleyana HOM05D006320 ORTHO05D007069 2.0e-20 102.1 75 84.0
SHI27343 Sapria himalayana HOM05D006320 ORTHO05D007069 2.6e-20 101.7 72 86.1
SGA_v2.0_scaffold255G45504 Striga asiatica HOM05D006320 ORTHO05D007069 2.6e-20 101.7 60 95.0
CANSAT21G1924 Cannabis sativa HOM05D006320 ORTHO05D007069 3.3e-20 101.3 71 87.3
SalBow8G4348 Salvia bowleyana HOM05D006320 ORTHO05D007069 3.3e-20 101.3 75 85.3
SHI49662 Sapria himalayana HOM05D006320 ORTHO05D007069 5.7e-20 100.5 72 87.5
SHI50161 Sapria himalayana HOM05D006320 ORTHO05D007069 5.7e-20 100.5 72 86.1
SHI34625 Sapria himalayana HOM05D000743 ORTHO05D000580 7.4e-20 100.1 68 85.3
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 9.7e-20 99.8 71 85.9
SHI42051 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-19 99.4 72 84.7
Nitab4.5_0002418g0080 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.7e-19 97.8 74 75.7
SHI41242 Sapria himalayana HOM05D006320 ORTHO05D007069 3.7e-19 97.8 70 85.7
SHI39076 Sapria himalayana HOM05D006320 ORTHO05D007069 4.8e-19 97.4 72 83.3
CAN.G547.1 Capsicum annuum HOM05D006320 ORTHO05D007069 6.3e-19 97.1 65 89.2
Nitab4.5_0001152g0710 Nicotiana tabacum HOM05D006320 ORTHO05D007069 8.2e-19 96.7 70 80.0
SHI36574 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-18 96.3 61 93.4
SHI52535 Sapria himalayana HOM05D006320 ORTHO05D007069 1.4e-18 95.9 63 87.3
SHI34993 Sapria himalayana HOM05D006320 ORTHO05D007069 1.8e-18 95.5 62 88.7
SHI35481 Sapria himalayana HOM05D000890 ORTHO05D007069 3.1e-18 94.7 58 93.1
Sc08g0004610 Simmondsia chinensis HOM05D006320 ORTHO05D007069 3.1e-18 94.7 74 81.1
SHI38465 Sapria himalayana HOM05D000743 ORTHO05D000580 4.1e-18 94.4 103 62.1
CAN.G761.5 Capsicum annuum HOM05D012609 ORTHO05D007069 7.0e-18 93.6 63 85.7
SHI50287 Sapria himalayana HOM05D006320 ORTHO05D007069 7.0e-18 93.6 61 86.9
SHI37138 Sapria himalayana HOM05D006320 ORTHO05D007069 9.1e-18 93.2 63 85.7
SHI51203 Sapria himalayana HOM05D006320 ORTHO05D007069 9.1e-18 93.2 59 89.8
SHI39778 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-17 92.4 62 87.1
SHI47782 Sapria himalayana HOM05D006320 ORTHO05D007069 2.0e-17 92.0 59 88.1
SHI49633 Sapria himalayana HOM05D006320 ORTHO05D007069 2.0e-17 92.0 63 84.1
SHI47632 Sapria himalayana HOM05D006320 ORTHO05D007069 3.5e-17 91.3 59 88.1
SHI38101 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-16 89.7 59 84.7
SHI40933 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-16 89.7 61 85.2
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 2.2e-16 88.6 60 86.7
SHI37168 Sapria himalayana HOM05D006320 ORTHO05D007069 5.0e-16 87.4 63 82.5
SHI36370 Sapria himalayana HOM05D006320 ORTHO05D007069 8.5e-16 86.7 61 83.6
SEGI_10818 Sequoiadendron giganteum HOM05D006320 ORTHO05D007069 2.5e-15 85.1 74 75.7
SHI41650 Sapria himalayana HOM05D000743 ORTHO05D000580 2.1e-14 82.0 54 87.0
Haze_26208 Corylus avellana HOM05D006320 ORTHO05D007069 3.6e-14 81.3 71 67.6
Haze_26209 Corylus avellana HOM05D006320 ORTHO05D007069 3.6e-14 81.3 71 67.6
Lsat_1_v5_gn_7_80061 Lactuca sativa HOM05D006320 ORTHO05D007069 3.6e-14 81.3 74 68.9
Cre17.g731950 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 8.0e-14 80.1 72 62.5
Cre17.g732000 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 8.0e-14 80.1 72 62.5
SHI25012 Sapria himalayana HOM05D006320 ORTHO05D007069 8.0e-14 80.1 75 68.0
CiPaw.06G021700 Carya illinoinensis HOM05D006320 ORTHO05D007069 1.8e-13 79.0 56 82.1
SHI36078 Sapria himalayana HOM05D000743 ORTHO05D007069 1.8e-13 79.0 49 89.8
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 2.3e-13 78.6 65 72.3
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 4.0e-13 77.8 49 89.8
TAR022G0003 Trochodendron aralioides HOM05D006320 ORTHO05D007069 4.0e-13 77.8 72 65.3
Manes.04G128250 Manihot esculenta HOM05D006320 ORTHO05D007069 6.8e-13 77.0 46 95.7
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 8.8e-13 76.6 49 85.7
SHI39478 Sapria himalayana HOM05D006320 ORTHO05D007069 8.8e-13 76.6 53 81.1
Nitab4.5_0000172g1000 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.0e-12 75.5 68 69.1
Peaxi162Scf00828g00512 Petunia axillaris HOM05D006320 ORTHO05D007069 2.0e-12 75.5 49 83.7
Peaxi162Scf03787g00001 Petunia axillaris HOM05D006320 ORTHO05D007069 2.0e-12 75.5 49 83.7
HanXRQChr08g0236091 Helianthus annuus HOM05D006320 ORTHO05D007069 2.6e-12 75.1 75 68.0
HanXRQMTg0579331 Helianthus annuus HOM05D006320 ORTHO05D007069 2.6e-12 75.1 75 68.0
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 5.7e-12 73.9 42 95.2
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 5.7e-12 73.9 42 95.2
HanXRQChr16g0504511 Helianthus annuus HOM05D006320 ORTHO05D007069 1.3e-11 72.8 75 66.7
SHI51623 Sapria himalayana HOM05D006320 ORTHO05D007069 2.8e-11 71.6 48 85.4
Nitab4.5_0001152g0490 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.7e-11 71.2 64 71.9
C04p27420 Brassica napus HOM05D006320 ORTHO05D007069 1.8e-10 68.9 47 83.0
EL10Ac6g14143 Beta vulgaris HOM05D010007 ORTHO05D007069 2.4e-10 68.6 41 95.1
Nitab4.5_0002404g0040 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.4e-10 68.6 74 64.9
Nitab4.5_0005246g0040 Nicotiana tabacum HOM05D007924 ORTHO05D007069 3.1e-10 68.2 53 75.5
CiPaw.04G019500 Carya illinoinensis HOM05D006320 ORTHO05D007069 4.1e-10 67.8 72 65.3
Os01g0899275 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 4.1e-10 67.8 40 92.5
Lsat_1_v5_gn_3_89840 Lactuca sativa HOM05D006320 ORTHO05D007069 5.3e-10 67.4 54 72.2
SHI43389 Sapria himalayana HOM05D000743 ORTHO05D000580 7.0e-10 67.0 63 66.7
Os01g0899350 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 4.5e-09 64.3 40 87.5
Nitab4.5_0010033g0150 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.0e-08 63.2 43 83.7
TAR424G0002 Trochodendron aralioides HOM05D006320 ORTHO05D007069 2.9e-08 61.6 58 60.3
Haze_27774 Corylus avellana HOM05D006320 ORTHO05D007069 8.5e-08 60.1 71 47.9
Haze_27775 Corylus avellana HOM05D006320 ORTHO05D007069 8.5e-08 60.1 71 47.9
Mapoly3785s0001 Marchantia polymorpha HOM05D006320 ORTHO05D007069 8.5e-08 60.1 62 59.7
Nitab4.5_0005853g0090 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.1e-07 59.7 43 76.7
SHI31532 Sapria himalayana HOM05D006320 ORTHO05D007069 1.5e-07 59.3 45 75.6
ClCG08G001280 Citrullus lanatus HOM05D006320 ORTHO05D007069 4.2e-07 57.8 38 86.8
Solyc10g049590.1 Solanum lycopersicum HOM05D000216 ORTHO05D007069 4.2e-07 57.8 41 80.5
Peaxi162Scf00446g00053 Petunia axillaris HOM05D006320 ORTHO05D007069 9.4e-07 56.6 33 93.9
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.2e-06 56.2 36 83.3
CAN.G231.25 Capsicum annuum HOM05D006320 ORTHO05D007069 3.6e-06 54.7 53 62.3
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 6.1e-06 53.9 34 88.2
SHI15041 Sapria himalayana HOM05D006320 ORTHO05D007069 6.1e-06 53.9 44 72.7


User provided reference genes

Program Settings