Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G086500 Phaseolus vulgaris HOM05D000461 ORTHO05D009042 3.2e-136 488.4 250 100.0
Glyma.12G220000 Glycine max HOM05D000461 ORTHO05D009042 2.2e-116 422.5 247 87.9
Glyma.13G281300 Glycine max HOM05D000461 ORTHO05D009042 2.4e-115 419.1 247 85.8
Psat5g246400 Pisum sativum HOM05D000461 ORTHO05D009042 2.6e-101 372.5 249 75.9
Ca_29614_v3 Cicer arietinum L. HOM05D000461 ORTHO05D009042 3.4e-101 372.1 254 73.6
Lalb_Chr01g0017011 Lupinus albus HOM05D000461 ORTHO05D009042 3.2e-99 365.5 248 76.2
Medtr2g080290 Medicago truncatula HOM05D000461 ORTHO05D009042 1.0e-97 360.5 248 73.0
TPR.G32851 Trifolium pratense HOM05D000461 ORTHO05D009042 5.2e-94 348.2 251 73.7
Lalb_Chr25g0286691 Lupinus albus HOM05D000461 ORTHO05D009042 1.1e-91 340.5 248 69.8
arahy.Tifrunner.gnm1.ann1.20QRXD Arachis hypogaea HOM05D000461 ORTHO05D009042 4.4e-85 318.5 242 71.5
Lj3g0027305 Lotus japonicus HOM05D000461 ORTHO05D009042 7.6e-85 317.8 257 71.6
arahy.Tifrunner.gnm1.ann1.IDBP1F Arachis hypogaea HOM05D000461 ORTHO05D009042 1.9e-83 313.2 243 71.2
QL93p2023_0091 Quercus lobata HOM05D000461 ORTHO05D009042 1.6e-82 310.1 249 65.5
QL08p018706 Quercus lobata HOM05D000461 ORTHO05D009042 2.1e-82 309.7 249 65.5
Cfa020516 Carpinus fangiana HOM05D000461 ORTHO05D009768 1.9e-80 303.1 225 68.0
CiPaw.11G175500 Carya illinoinensis HOM05D000461 ORTHO05D009042 3.3e-80 302.4 249 63.1
Prupe.4G189000 Prunus persica HOM05D000461 ORTHO05D009042 8.4e-76 287.7 249 60.6
Dinv08335 Davidia involucrata HOM05D000461 ORTHO05D009042 4.2e-75 285.4 259 59.8
VMungo1080G0679 Vigna mungo HOM05D000461 ORTHO05D009042 1.2e-74 283.9 166 85.5
Manes.03G116000 Manihot esculenta HOM05D000461 ORTHO05D009042 3.5e-74 282.3 255 61.6
CSS0025788 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 7.9e-74 281.2 258 56.6
TWI39G0508 Tripterygium wilfordii HOM05D000461 ORTHO05D009042 3.9e-73 278.9 250 64.0
Dinv22369 Davidia involucrata HOM05D000461 ORTHO05D009042 8.7e-73 277.7 261 61.3
Ciclev10009303m.g Citrus clementina HOM05D000461 ORTHO05D009042 1.4e-70 270.4 253 60.5
ClCG10G006570 Citrullus lanatus HOM05D000461 ORTHO05D009042 4.0e-70 268.9 252 61.5
RcHm_v2.0_Chr5g0035191 Rosa chinensis HOM05D000461 ORTHO05D009042 1.5e-69 266.9 250 56.0
MD11G1238100 Malus domestica HOM05D000461 ORTHO05D009042 3.4e-69 265.8 254 59.4
Eucgr.F03352 Eucalyptus grandis HOM05D000461 ORTHO05D009042 2.2e-68 263.1 217 65.0
Hma1.2p1_1003F.1_g246730 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 2.9e-68 262.7 218 64.2
Potri.001G405800 Populus trichocarpa HOM05D000461 ORTHO05D009042 8.4e-68 261.2 256 57.0
Cpa.g.sc80.106 Carica papaya HOM05D000461 ORTHO05D009042 2.4e-67 259.6 251 57.8
CANSAT11G1238 Cannabis sativa HOM05D000461 ORTHO05D009042 2.1e-66 256.5 252 56.7
Nn1g03924 Nelumbo nucifera HOM05D000461 ORTHO05D009042 3.5e-66 255.8 227 61.2
Solyc07g063530.3 Solanum lycopersicum HOM05D000461 ORTHO05D009042 4.6e-66 255.4 259 52.9
FAN11G0265 Fragaria x ananassa HOM05D000461 ORTHO05D009042 6.0e-66 255.0 254 56.3
Sed0008890 Sechium edule HOM05D000461 ORTHO05D009042 2.3e-65 253.1 250 58.0
FAN21G1502 Fragaria x ananassa HOM05D000461 ORTHO05D009042 3.9e-65 252.3 250 54.0
FAN16G2536 Fragaria x ananassa HOM05D000461 ORTHO05D009042 1.9e-64 250.0 252 54.8
Rhsim04G0018200 Rhododendron simsii HOM05D000461 ORTHO05D009042 2.5e-64 249.6 266 51.5
Sabra16G0269500 Salix brachista HOM05D000461 ORTHO05D009042 2.5e-64 249.6 282 51.4
Sabra16G0267700 Salix brachista HOM05D000461 ORTHO05D009042 9.6e-64 247.7 282 52.5
CsaV3_3G006020 Cucumis sativus L. HOM05D000461 ORTHO05D009042 1.6e-63 246.9 253 57.3
Duzib213G0849 Durio zibethinus HOM05D000461 ORTHO05D009042 6.2e-63 245.0 258 56.2
Nitab4.5_0000297g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 8.1e-63 244.6 267 55.8
MD03G1219800 Malus domestica HOM05D000461 ORTHO05D009042 1.1e-62 244.2 253 54.9
COL.COLO4_09469 Corchorus olitorius HOM05D000461 ORTHO05D009768 4.0e-62 242.3 231 60.6
Thecc.07G072900 Theobroma cacao HOM05D000461 ORTHO05D009042 4.0e-62 242.3 257 56.4
PGR031G2091 Punica granatum HOM05D000461 ORTHO05D009042 2.6e-61 239.6 185 67.6
Atru.chr2.2831 Acer truncatum HOM05D000461 ORTHO05D009042 3.4e-61 239.2 232 56.0
TAR626G1568 Trochodendron aralioides HOM05D000461 ORTHO05D009042 7.6e-61 238.0 259 54.4
Ah.04g164980 Amaranthus hybridus HOM05D000461 ORTHO05D009042 1.3e-60 237.3 216 56.5
Nitab4.5_0002565g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 1.3e-60 237.3 239 57.3
MSTRG.15210 Avicennia marina HOM05D000461 ORTHO05D009042 1.7e-60 236.9 247 55.1
BolC7t46022H Brassica oleracea HOM05D000461 ORTHO05D009042 3.2e-59 232.6 240 52.5
Cc05_g12620 Coffea canephora HOM05D000461 ORTHO05D009042 4.2e-59 232.3 204 63.2
Thhalv10026109m.g Eutrema salsugineum HOM05D000461 ORTHO05D009042 1.2e-58 230.7 259 49.0
Sopen07g031710 Solanum pennellii HOM05D000461 ORTHO05D009042 1.2e-58 230.7 170 65.3
BcaC06g32696 Brassica carinata HOM05D000461 ORTHO05D009042 2.1e-58 229.9 240 52.1
Gohir.A01G068300 Gossypium hirsutum HOM05D000461 ORTHO05D009042 7.9e-58 228.0 257 52.9
Migut.M00872 Erythranthe guttata HOM05D000461 ORTHO05D009042 1.3e-57 227.3 228 57.9
PSO210G3087 Papaver somniferum HOM05D000461 ORTHO05D009042 1.8e-57 226.9 256 53.1
THA.LOC104799911 Tarenaya hassleriana HOM05D000461 ORTHO05D009042 1.8e-57 226.9 184 61.4
C07p55420 Brassica napus HOM05D000461 ORTHO05D009042 3.0e-57 226.1 240 51.2
GSVIVG01014422001 Vitis vinifera HOM05D000461 ORTHO05D009042 3.9e-57 225.7 148 72.3
A03p57230 Brassica napus HOM05D000461 ORTHO05D009042 8.7e-57 224.6 239 51.0
BraA03t14789Z Brassica rapa HOM05D000461 ORTHO05D009042 8.7e-57 224.6 239 51.0
Carub.0007s1348 Capsella rubella HOM05D000461 ORTHO05D009042 8.7e-57 224.6 240 50.8
Sc03g0009630 Simmondsia chinensis HOM05D000461 ORTHO05D009042 1.5e-56 223.8 256 51.2
Sp7g25320 Schrenkiella parvula HOM05D000461 ORTHO05D009042 1.9e-56 223.4 230 51.7
CARHR235060 Cardamine hirsuta HOM05D000461 ORTHO05D009042 7.4e-56 221.5 241 50.6
Lsat_1_v5_gn_7_106400 Lactuca sativa HOM05D000461 ORTHO05D009042 9.6e-56 221.1 179 62.6
Gohir.D01G055600 Gossypium hirsutum HOM05D000461 ORTHO05D009042 3.7e-55 219.2 146 71.9
Aqoxy1G02771 Aquilegia oxysepala HOM05D000461 ORTHO05D009042 4.8e-55 218.8 219 54.3
Gorai.002G075700 Gossypium raimondii HOM05D000461 ORTHO05D009042 4.8e-55 218.8 149 71.1
AT4G27390 Arabidopsis thaliana HOM05D000461 ORTHO05D009042 8.2e-55 218.0 257 47.5
Actinidia25643 Actinidia chinensis HOM05D000461 ORTHO05D009042 3.1e-54 216.1 191 57.6
Actinidia18752 Actinidia chinensis HOM05D000461 ORTHO05D009042 4.1e-54 215.7 224 53.6
PSO832G2223 Papaver somniferum HOM05D000461 ORTHO05D009042 1.2e-53 214.2 208 59.1
Aa31LG5G10130 Aethionema arabicum HOM05D000461 ORTHO05D009042 7.6e-53 211.5 180 62.2
AL7G25410 Arabidopsis lyrata HOM05D000461 ORTHO05D009042 7.6e-53 211.5 239 50.2
CDE05G1014 Ceratophyllum demersum HOM05D000461 ORTHO05D009042 5.0e-52 208.8 177 59.9
SGA_v2.0_scaffold73G24312 Striga asiatica HOM05D000461 ORTHO05D009042 5.0e-52 208.8 259 49.8
Peaxi162Scf01216g00058 Petunia axillaris HOM05D000461 ORTHO05D009042 1.1e-51 207.6 230 52.6
DCAR_013076 Daucus carota HOM05D000461 ORTHO05D009768 1.2e-50 204.1 173 56.6
FvH4_3g20860 Fragaria vesca HOM05D000461 ORTHO05D009042 1.2e-50 204.1 201 56.7
vmacro09553 Vaccinium macrocarpon HOM05D000461 ORTHO05D009042 2.8e-47 193.0 353 38.2
HanXRQChr11g0330871 Helianthus annuus HOM05D000461 ORTHO05D009042 3.7e-47 192.6 244 49.2
EL10Ac4g08079 Beta vulgaris HOM05D000461 ORTHO05D009042 8.2e-47 191.4 272 41.5
Oeu005436.1 Olea europaea HOM05D000461 ORTHO05D009042 1.4e-46 190.7 125 71.2
Actinidia35273 Actinidia chinensis HOM05D000461 ORTHO05D009042 1.8e-46 190.3 257 43.6
Haze_09518 Corylus avellana HOM05D000461 ORTHO05D009042 3.4e-45 186.0 278 43.5
ECA236G1699 Erigeron canadensis HOM05D003383 ORTHO05D003890 5.5e-43 178.7 142 58.5
AUR62029322 Chenopodium quinoa HOM05D000461 ORTHO05D009042 1.8e-41 173.7 222 47.3
MELO3C016549.2 Cucumis melo HOM05D000461 ORTHO05D009042 8.8e-41 171.4 179 52.5
HPP92_001809 Vanilla planifolia HOM05D000461 ORTHO05D009042 4.8e-39 165.6 124 62.1
AUR62015609 Chenopodium quinoa HOM05D000461 ORTHO05D009042 1.1e-38 164.5 191 50.8
Zm00001eb352790 Zea mays HOM05D000461 ORTHO05D009042 2.4e-38 163.3 153 51.0
Os05g0502500 Oryza sativa ssp. japonica HOM05D000461 ORTHO05D009042 1.5e-37 160.6 145 54.5
CSS0035681 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 2.6e-37 159.8 176 55.1
Hund28424 Selenicereus undatus HOM05D000461 ORTHO05D009042 3.8e-36 156.0 205 47.8
Hund28429 Selenicereus undatus HOM05D000461 ORTHO05D009042 3.8e-36 156.0 205 47.8
PGSC0003DMG400019287 Solanum tuberosum HOM05D000461 ORTHO05D009042 9.4e-35 151.4 105 66.7
RcHm_v2.0_Chr5g0035211 Rosa chinensis HOM05D000461 ORTHO05D009042 1.6e-34 150.6 109 63.3
Mapoly0059s0039 Marchantia polymorpha HOM05D000461 ORTHO05D009042 3.6e-34 149.4 161 45.3
SMO347G0332 Selaginella moellendorffii HOM05D000461 ORTHO05D009042 2.0e-29 133.7 135 47.4
CBR_g3118 Chara braunii HOM05D000461 ORTHO05D009042 9.4e-27 124.8 150 45.3
Manes.15G162800 Manihot esculenta HOM05D000461 ORTHO05D009042 1.6e-26 124.0 86 67.4
Hma1.2p1_1003F.1_g246740 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 1.8e-25 120.6 82 67.1
Pp3c5_7600 Physcomitrium patens HOM05D000461 ORTHO05D009042 1.7e-23 114.0 229 33.6
ATR0693G207 Amborella trichopoda HOM05D000461 ORTHO05D009042 4.8e-23 112.5 96 60.4
unitig_85.g27405 Utricularia gibba HOM05D000461 ORTHO05D009042 8.0e-10 68.6 143 35.0
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 7.5e-08 62.0 73 45.2


User provided reference genes

Program Settings