Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G086000 Phaseolus vulgaris HOM05D007566 ORTHO05D009505 1.2e-41 172.9 101 100.0
Glyma.12G219500 Glycine max HOM05D007566 ORTHO05D009505 2.5e-34 148.7 102 87.3
Glyma.13G281800 Glycine max HOM05D007566 ORTHO05D009505 3.0e-32 141.7 102 83.3
Lalb_Chr25g0286741 Lupinus albus HOM05D007566 ORTHO05D009505 4.1e-29 131.3 101 72.3
TPR.G32847 Trifolium pratense HOM05D007566 ORTHO05D009505 1.7e-27 125.9 101 74.3
Lj3g0013461 Lotus japonicus HOM05D007566 ORTHO05D009505 7.2e-26 120.6 102 75.5
Psat5g246560 Pisum sativum HOM05D007566 ORTHO05D009505 2.1e-25 119.0 101 70.3
arahy.Tifrunner.gnm1.ann1.MQ63GR Arachis hypogaea HOM05D007566 ORTHO05D009505 7.9e-25 117.1 108 68.5
arahy.Tifrunner.gnm1.ann1.YDUQ9T Arachis hypogaea HOM05D007566 ORTHO05D009505 2.3e-24 115.5 108 67.6
Duzib213G0757 Durio zibethinus HOM05D007566 ORTHO05D009505 1.5e-23 112.8 101 66.3
Medtr2g080990 Medicago truncatula HOM05D007566 ORTHO05D009505 4.3e-23 111.3 104 69.2
TWI39G1107 Tripterygium wilfordii HOM05D007566 ORTHO05D009505 2.4e-21 105.5 101 64.4
MELO3C016554.2 Cucumis melo HOM05D007566 ORTHO05D009505 5.3e-21 104.4 101 64.4
Ciclev10010014m.g Citrus clementina HOM05D007566 ORTHO05D009505 1.0e-19 100.1 101 65.3
CANSAT11G1965 Cannabis sativa HOM05D007566 ORTHO05D009505 2.2e-19 99.0 101 62.4
Manes.15G083200 Manihot esculenta HOM05D007566 ORTHO05D009505 2.2e-19 99.0 101 63.4
CiPaw.11G176600 Carya illinoinensis HOM05D007566 ORTHO05D009505 3.8e-19 98.2 101 62.4
COL.COLO4_09480 Corchorus olitorius HOM05D007566 ORTHO05D009505 3.8e-19 98.2 101 57.4
PGR083G0896 Punica granatum HOM05D007566 ORTHO05D009505 5.0e-19 97.8 101 61.4
CsaV3_3G005960 Cucumis sativus L. HOM05D007566 ORTHO05D009505 6.5e-19 97.4 101 62.4
Thecc.07G071100 Theobroma cacao HOM05D007566 ORTHO05D009505 1.1e-18 96.7 102 62.7
MD11G1237100 Malus domestica HOM05D007566 ORTHO05D009505 1.4e-18 96.3 101 58.4
Atru.chr2.2863 Acer truncatum HOM05D007566 ORTHO05D009505 1.2e-17 93.2 101 59.4
FvH4_3g21000 Fragaria vesca HOM05D007566 ORTHO05D009505 1.6e-17 92.8 101 58.4
FAN11G3987 Fragaria x ananassa HOM05D007566 ORTHO05D009505 1.6e-17 92.8 101 58.4
GSVIVG01014436001 Vitis vinifera HOM05D007566 ORTHO05D009505 1.6e-17 92.8 103 58.3
Dinv08341 Davidia involucrata HOM05D007566 ORTHO05D009505 3.6e-17 91.7 99 59.6
Potri.001G406900 Populus trichocarpa HOM05D007566 ORTHO05D009505 3.6e-17 91.7 102 60.8
Prupe.4G190300 Prunus persica HOM05D007566 ORTHO05D009505 3.6e-17 91.7 101 57.4
Sabra16G0268300 Salix brachista HOM05D007566 ORTHO05D009505 6.1e-17 90.9 102 61.8
Sabra16G0270600 Salix brachista HOM05D007566 ORTHO05D009505 6.1e-17 90.9 102 61.8
FAN25G3649 Fragaria x ananassa HOM05D007566 ORTHO05D009505 1.8e-16 89.4 101 56.4
Hund23375 Selenicereus undatus HOM05D007566 ORTHO05D009505 3.9e-16 88.2 103 57.3
ClCG10G006500 Citrullus lanatus HOM05D007566 ORTHO05D009505 5.1e-16 87.8 101 55.4
Oeu030434.1 Olea europaea HOM05D007566 ORTHO05D009505 5.1e-16 87.8 105 58.1
RcHm_v2.0_Chr5g0035981 Rosa chinensis HOM05D007566 ORTHO05D009505 6.7e-16 87.4 101 55.4
Cpa.g.sc389.3 Carica papaya HOM05D007566 ORTHO05D009505 1.1e-15 86.7 101 55.4
VMungo0647G1906 Vigna mungo HOM05D007566 ORTHO05D009505 1.1e-15 86.7 54 94.4
Aa31LG5G10140 Aethionema arabicum HOM05D007566 ORTHO05D009505 4.4e-15 84.7 103 58.3
PSO541G1909 Papaver somniferum HOM05D007566 ORTHO05D009505 5.7e-15 84.3 103 53.4
EL10Ac4g08058 Beta vulgaris HOM05D007566 ORTHO05D009505 7.4e-15 84.0 101 58.4
PSO675G4296 Papaver somniferum HOM05D007566 ORTHO05D009505 9.7e-15 83.6 103 53.4
TAR627G0519 Trochodendron aralioides HOM05D007566 ORTHO05D009505 9.7e-15 83.6 101 55.4
ECA246G4377 Erigeron canadensis HOM05D007566 ORTHO05D009505 2.8e-14 82.0 102 60.8
Migut.M01859 Erythranthe guttata HOM05D007566 ORTHO05D009505 3.7e-14 81.6 101 54.5
Ah.04g165410 Amaranthus hybridus HOM05D007566 ORTHO05D009505 6.3e-14 80.9 102 60.8
Hma1.2p1_3251F.1_g334500 Hydrangea macrophylla HOM05D007566 ORTHO05D009505 8.2e-14 80.5 106 56.6
TAR371G0602 Trochodendron aralioides HOM05D007566 ORTHO05D009505 8.2e-14 80.5 103 54.4
Cc05_g12690 Coffea canephora HOM05D007566 ORTHO05D009505 1.4e-13 79.7 104 55.8
Gohir.D01G055900 Gossypium hirsutum HOM05D007566 ORTHO05D009505 1.8e-13 79.3 101 54.5
BcaNung07200 Brassica carinata HOM05D007566 ORTHO05D009505 2.4e-13 79.0 105 53.3
C01p23510 Brassica napus HOM05D007566 ORTHO05D009505 2.4e-13 79.0 105 53.3
BolC1t02296H Brassica oleracea HOM05D007566 ORTHO05D009505 2.4e-13 79.0 105 53.3
Gohir.A01G068600 Gossypium hirsutum HOM05D007566 ORTHO05D009505 2.4e-13 79.0 101 54.5
Nitab4.5_0000297g0110 Nicotiana tabacum HOM05D007566 ORTHO05D009505 2.4e-13 79.0 101 54.5
Rhsim06G0192900 Rhododendron simsii HOM05D007566 ORTHO05D009505 2.4e-13 79.0 103 55.3
THA.LOC104811846 Tarenaya hassleriana HOM05D007566 ORTHO05D009505 2.4e-13 79.0 101 51.5
Gorai.002G076000 Gossypium raimondii HOM05D007566 ORTHO05D009505 3.1e-13 78.6 101 54.5
Sp7g25310 Schrenkiella parvula HOM05D007566 ORTHO05D009505 4.1e-13 78.2 103 52.4
BraA01t01804Z Brassica rapa HOM05D007566 ORTHO05D009505 5.3e-13 77.8 104 52.9
A01p18560 Brassica napus HOM05D007566 ORTHO05D009505 9.1e-13 77.0 105 53.3
Lsat_1_v5_gn_5_6820 Lactuca sativa HOM05D007566 ORTHO05D009505 9.1e-13 77.0 102 54.9
Sc16g0006770 Simmondsia chinensis HOM05D007566 ORTHO05D009505 9.1e-13 77.0 101 53.5
Zm00001eb106900 Zea mays HOM05D007566 ORTHO05D009505 4.5e-12 74.7 112 50.9
HanXRQChr05g0151621 Helianthus annuus HOM05D007566 ORTHO05D009505 1.0e-11 73.6 102 55.9
Aqoxy1G02746 Aquilegia oxysepala HOM05D007566 ORTHO05D009505 2.2e-11 72.4 100 56.0
CDE05G3101 Ceratophyllum demersum HOM05D007566 ORTHO05D009505 2.2e-11 72.4 102 52.0
PGSC0003DMG401019249 Solanum tuberosum HOM05D007566 ORTHO05D009505 2.2e-11 72.4 101 51.5
Eucgr.F01078 Eucalyptus grandis HOM05D007566 ORTHO05D009505 5.0e-11 71.2 102 50.0
BcaNung03032 Brassica carinata HOM05D007566 ORTHO05D009505 8.5e-11 70.5 104 50.0
Solyc07g063575.1 Solanum lycopersicum HOM05D007566 ORTHO05D009505 8.5e-11 70.5 101 50.5
Sopen07g031760 Solanum pennellii HOM05D007566 ORTHO05D009505 8.5e-11 70.5 101 50.5
GSVIVG01014434001 Vitis vinifera HOM05D007566 ORTHO05D009505 8.5e-11 70.5 97 55.7
FAN21G0859 Fragaria x ananassa HOM05D007566 ORTHO05D009505 3.2e-10 68.6 101 49.5
Actinidia39409 Actinidia chinensis HOM05D007566 ORTHO05D009505 4.2e-10 68.2 103 51.5
DCAR_009984 Daucus carota HOM05D007566 ORTHO05D009505 5.5e-10 67.8 105 54.3
SGA_v2.0_scaffold73G24317 Striga asiatica HOM05D007566 ORTHO05D009505 6.1e-09 64.3 122 46.7
AUR62015600 Chenopodium quinoa HOM05D007566 ORTHO05D009505 1.0e-08 63.5 101 49.5
Os07g0562900 Oryza sativa ssp. japonica HOM05D007566 ORTHO05D009505 1.8e-08 62.8 113 46.9
TWI38G1712 Tripterygium wilfordii HOM05D007566 ORTHO05D009505 2.3e-08 62.4 186 33.3
unitig_0.g2051 Utricularia gibba HOM05D007566 ORTHO05D009505 3.0e-08 62.0 107 45.8
MSTRG.15205 Avicennia marina HOM05D007566 ORTHO05D009505 5.2e-08 61.2 105 46.7
CARHR235050 Cardamine hirsuta HOM05D007566 ORTHO05D009505 1.1e-07 60.1 104 47.1
Nitab4.5_0008686g0030 Nicotiana tabacum HOM05D007566 ORTHO05D009505 1.1e-07 60.1 101 46.5
Nn1g03914 Nelumbo nucifera HOM05D007566 ORTHO05D009505 1.5e-07 59.7 101 46.5
vmacro11813 Vaccinium macrocarpon HOM05D007566 ORTHO05D009505 6.3e-06 54.3 53 64.2


User provided reference genes

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