Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 2513.8 1255 100.0
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 2356.6 1259 93.1
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 2245.3 1258 88.2
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2239.2 1258 88.1
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 2232.2 1256 88.0
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 2218.7 1158 94.9
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 2213.3 1274 86.4
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2195.6 1258 86.6
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2177.9 1259 85.6
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2170.2 1258 86.2
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2165.2 1285 84.1
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2105.1 1257 83.4
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2012.7 1261 79.5
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 2001.9 1258 79.4
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1996.9 1253 77.8
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1987.6 1260 78.0
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1984.1 1264 77.3
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1984.1 1260 78.2
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1984.1 1258 78.4
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1979.9 1258 77.9
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1979.1 1259 77.8
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1978.8 1259 77.6
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1978.0 1257 77.6
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1968.7 1259 78.2
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1961.8 1253 76.5
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1961.0 1254 77.2
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1961.0 1258 78.0
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1960.3 1255 77.1
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1959.1 1264 76.7
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1958.7 1257 78.1
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1958.3 1253 76.4
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1955.3 1254 77.0
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1948.7 1270 76.1
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1947.9 1258 76.2
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1944.1 1300 74.8
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1943.3 1254 76.7
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1941.8 1258 76.2
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1940.6 1254 76.4
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1937.2 1254 76.3
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1935.2 1254 76.2
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1927.9 1258 75.9
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1922.9 1253 75.7
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1917.1 1252 76.4
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1911.0 1240 77.4
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1909.4 1258 74.7
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1900.2 1260 75.1
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1899.8 1260 75.5
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1894.0 1517 66.1
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1891.3 1259 74.6
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1891.3 1260 74.7
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1891.3 1282 74.0
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1888.6 1260 74.3
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1886.7 1322 72.0
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1884.8 1255 74.8
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1882.5 1259 74.5
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1880.1 1262 73.9
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1877.8 1262 73.9
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1876.7 1264 73.9
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1875.9 1260 74.0
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1875.1 1263 74.0
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1874.4 1263 73.0
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1873.2 1268 73.6
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1872.1 1287 72.5
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1870.9 1263 72.8
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1867.0 1258 73.1
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1863.6 1258 73.1
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1858.2 1006 92.4
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1857.4 1253 74.2
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1852.4 1264 72.8
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1851.6 1242 74.3
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1851.3 1261 72.7
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1850.5 1261 72.8
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1848.2 1256 72.9
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1846.6 1262 72.7
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1841.6 1259 72.5
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1840.5 1260 72.7
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1839.7 1258 72.8
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1837.0 1262 72.7
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1835.1 1268 71.1
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1831.2 1258 72.3
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1830.5 1259 72.2
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1825.8 1260 72.4
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1823.9 1260 72.0
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1822.0 1261 72.0
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1819.3 1260 71.9
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1816.6 1261 72.3
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1803.5 1164 76.5
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1786.9 1241 71.4
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1765.4 1270 70.8
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1758.4 1326 67.7
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1732.2 1254 67.7
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1731.8 1233 70.6
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1686.0 1252 67.7
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1598.9 1033 77.3
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1590.9 1078 72.9
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1582.4 1227 64.8
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1575.1 1258 63.3
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1567.7 1091 72.0
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1528.8 1051 73.2
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1511.5 1032 73.6
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1504.6 1059 71.2
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1422.5 1095 67.2
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1400.2 1013 69.5
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1379.8 926 75.2
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1370.9 856 78.7
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1285.8 1391 49.7
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1172.1 1260 52.7
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1165.2 1361 46.7
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1164.1 771 74.4
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1121.3 746 72.4
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 5.5e-301 1038.1 861 62.3
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 3.8e-294 1015.4 1013 55.4
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 5.0e-286 988.4 1147 46.2
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 3.8e-278 962.2 867 60.9
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 5.2e-259 898.7 592 76.7
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.6e-244 849.4 538 77.1
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 4.0e-227 792.7 445 87.4
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 5.1e-198 696.0 1434 33.1
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 3.8e-177 626.7 450 68.7
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.3e-156 558.5 489 58.7
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 9.5e-152 542.3 306 85.0
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 1.9e-115 421.8 316 64.9
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 8.4e-100 369.8 205 86.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 4.3e-96 357.5 232 78.9
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.5e-93 349.0 226 79.2
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.0e-92 346.3 318 60.7
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.1e-90 338.6 372 47.8
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.1e-89 334.0 194 80.4
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 3.7e-87 327.8 256 62.1
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 2.4e-78 298.5 172 83.7
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 4.7e-74 284.3 159 87.4
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 8.2e-71 273.5 152 84.2
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.2e-69 269.6 256 55.1
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.2e-69 269.6 256 55.1
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.2e-69 269.6 256 55.1
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.6e-69 269.2 263 53.2
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 8.0e-66 256.9 194 64.4
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 8.5e-60 236.9 446 34.3
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 2.5e-59 235.3 197 60.4
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 8.8e-57 226.9 166 68.1
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.2e-56 226.5 151 70.2
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.5e-51 209.5 132 74.2
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.5e-48 197.2 143 62.2
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.3e-47 196.4 137 68.6
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.5e-43 182.2 107 78.5
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.3e-43 181.4 121 74.4
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.7e-42 177.9 107 77.6
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 5.2e-41 174.5 130 66.2
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 6.8e-41 174.1 102 83.3
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 8.9e-41 173.7 149 59.1
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.9e-41 173.7 107 76.6
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.9e-41 173.7 107 76.6
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 9.8e-40 170.2 106 76.4
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.6e-37 161.4 98 76.5
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.3e-36 159.1 98 82.7
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 6.6e-36 157.5 111 70.3
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.7e-31 142.9 81 76.5
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 4.1e-30 138.3 78 79.5
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 2.0e-29 136.0 65 92.3
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.0e-28 133.7 123 58.5
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 6.2e-26 124.4 78 76.9
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 4.0e-25 121.7 87 65.5
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 3.7e-23 115.2 106 60.4
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 1.2e-21 110.2 107 47.7
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 5.6e-19 101.3 62 72.6
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 6.2e-18 97.8 57 77.2
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 8.1e-18 97.4 572 23.3
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 2.0e-16 92.8 81 56.8
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.8e-15 88.6 52 73.1
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 2.7e-13 82.4 99 45.5
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 5.1e-12 78.2 388 22.7
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 3.3e-11 75.5 45 80.0
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.1e-09 70.5 69 46.4
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 1.5e-08 66.6 52 63.5


User provided reference genes

Program Settings