Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 2.7e-58 228.4 112 100.0
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 5.8e-53 210.7 112 92.0
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 9.3e-51 203.4 113 88.5
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 1.4e-46 189.5 113 84.1
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 2.6e-37 158.7 113 75.2
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 2.7e-34 148.7 107 72.9
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 7.9e-34 147.1 117 70.9
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 3.9e-33 144.8 114 69.3
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 8.8e-33 143.7 114 70.2
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 2.5e-27 125.6 116 65.5
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 2.6e-24 115.5 113 56.6
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 9.7e-24 113.6 115 52.2
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 4.8e-23 111.3 69 79.7
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 1.2e-21 106.7 112 51.8
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 2.6e-21 105.5 72 70.8
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 5.0e-20 101.3 115 56.5
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 6.5e-20 100.9 106 53.8
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 1.5e-19 99.8 73 71.2
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.5e-19 99.8 115 47.8
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.5e-19 99.8 115 47.8
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 3.2e-19 98.6 71 63.4
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 9.4e-19 97.1 82 63.4
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 2.7e-18 95.5 74 64.9
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 2.7e-18 95.5 116 48.3
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 3.6e-18 95.1 109 51.4
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 3.6e-18 95.1 106 50.9
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.6e-18 95.1 106 50.9
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 6.1e-18 94.4 109 49.5
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 6.1e-18 94.4 98 56.1
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 8.0e-18 94.0 106 50.0
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 8.0e-18 94.0 106 50.0
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 1.0e-17 93.6 100 52.0
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.0e-17 93.6 85 58.8
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.0e-17 93.6 116 47.4
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 1.4e-17 93.2 118 47.5
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 1.4e-17 93.2 75 66.7
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 1.4e-17 93.2 114 50.0
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.8e-17 92.8 118 50.0
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 3.0e-17 92.0 75 61.3
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 4.0e-17 91.7 71 63.4
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 6.7e-17 90.9 69 63.8
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 8.8e-17 90.5 70 62.9
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 1.2e-16 90.1 71 62.0
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 2.0e-16 89.4 71 60.6
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 2.6e-16 89.0 71 66.2
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 2.6e-16 89.0 71 60.6
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 4.4e-16 88.2 71 59.2
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 4.4e-16 88.2 67 62.7
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 4.4e-16 88.2 67 62.7
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 4.4e-16 88.2 67 62.7
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 5.7e-16 87.8 74 64.9
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 7.5e-16 87.4 71 59.2
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 7.5e-16 87.4 71 59.2
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 7.5e-16 87.4 75 64.0
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 7.5e-16 87.4 107 51.4
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 9.7e-16 87.0 71 63.4
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 9.7e-16 87.0 71 63.4
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 9.7e-16 87.0 71 63.4
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 6.3e-15 84.3 76 64.5
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 1.4e-14 83.2 104 50.0
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 9.1e-14 80.5 71 62.0
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 9.1e-14 80.5 75 60.0
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 5.9e-13 77.8 75 57.3
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 5.9e-13 77.8 75 57.3
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 5.9e-13 77.8 75 57.3
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 1.3e-12 76.6 67 58.2
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 1.7e-12 76.3 72 56.9
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 1.7e-12 76.3 72 56.9
Lalb_Chr19g0134351 Lupinus albus HOM05D007708 ORTHO05D009506 2.5e-11 72.4 108 47.2
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 5.5e-11 71.2 67 53.7
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 2.1e-10 69.3 51 68.6
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 3.6e-10 68.6 69 55.1
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 6.1e-10 67.8 104 42.3
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 1.8e-09 66.2 76 53.9
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 1.5e-08 63.2 68 51.5
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 2.6e-08 62.4 68 51.5
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 3.4e-08 62.0 43 76.7
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 3.4e-08 62.0 75 52.0
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 6.3e-07 57.8 58 58.6
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 6.3e-07 57.8 41 73.2
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 8.3e-07 57.4 40 72.5
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 8.3e-07 57.4 50 60.0
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 1.4e-06 56.6 58 55.2
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 2.4e-06 55.8 72 45.8
MBI02_g19254_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 5.4e-06 54.7 64 51.6
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 9.1e-06 53.9 49 61.2
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 9.1e-06 53.9 38 71.1


User provided reference genes

Program Settings