Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 6.1e-45 183.7 90 100.0
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.9e-30 135.6 125 60.8
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 3.6e-29 131.3 127 58.3
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 4.0e-28 127.9 125 56.0
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 3.4e-27 124.8 128 57.8
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 3.1e-20 101.7 125 47.2
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 2.2e-18 95.5 123 43.9
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 8.4e-18 93.6 125 46.4
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.9e-17 92.4 96 52.1
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 9.2e-17 90.1 131 41.2
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 9.2e-17 90.1 130 44.6
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.2e-16 89.7 127 44.9
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 1.6e-16 89.4 131 41.2
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 6.0e-16 87.4 127 44.1
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 7.8e-16 87.0 130 43.8
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.0e-15 86.7 130 42.3
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.7e-15 85.9 128 43.0
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 3.9e-15 84.7 127 43.3
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 5.1e-15 84.3 126 43.7
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 6.6e-15 84.0 87 49.4
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 6.6e-15 84.0 130 42.3
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 8.7e-15 83.6 132 40.2
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.9e-14 82.4 126 40.5
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.9e-14 82.4 131 42.7
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 3.3e-14 81.6 130 37.7
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 4.3e-14 81.3 85 51.8
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 5.6e-14 80.9 132 43.2
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 1.2e-13 79.7 132 43.2
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 1.2e-13 79.7 132 41.7
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.6e-13 79.3 127 42.5
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 3.6e-13 78.2 133 39.8
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 4.7e-13 77.8 131 39.7
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 6.2e-13 77.4 129 38.8
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 6.2e-13 77.4 132 39.4
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 1.1e-12 76.6 131 38.9
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.4e-12 76.3 132 40.2
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.1e-12 75.1 130 37.7
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 4.0e-12 74.7 132 37.1
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 5.3e-12 74.3 132 37.9
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 5.3e-12 74.3 131 38.2
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 6.9e-12 73.9 132 37.9
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.2e-11 73.2 127 39.4
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-11 73.2 127 39.4
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.5e-11 72.8 127 38.6
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.5e-11 72.8 127 38.6
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 2.6e-11 72.0 133 36.8
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 3.4e-11 71.6 139 39.6
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 3.4e-11 71.6 129 41.1
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 5.8e-11 70.9 130 36.9
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 5.8e-11 70.9 89 46.1
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 9.9e-11 70.1 130 36.9
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.3e-10 69.7 132 35.6
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.3e-10 69.7 141 36.2
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 2.2e-10 68.9 136 36.0
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.2e-10 68.9 127 37.8
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.2e-10 68.9 127 37.8
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 2.2e-10 68.9 87 44.8
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 2.9e-10 68.6 85 47.1
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 3.8e-10 68.2 129 38.0
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.8e-10 68.2 85 45.9
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.8e-10 68.2 85 45.9
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 3.8e-10 68.2 129 34.1
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 3.8e-10 68.2 130 37.7
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 4.9e-10 67.8 131 35.1
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 6.4e-10 67.4 129 38.0
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 6.4e-10 67.4 130 36.2
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.4e-09 66.2 85 44.7
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.9e-09 65.9 130 36.9
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.9e-09 65.9 85 44.7
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.9e-09 65.9 90 44.4
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 4.2e-09 64.7 130 34.6
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 5.4e-09 64.3 130 35.4
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 5.4e-09 64.3 130 38.5
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 7.1e-09 63.9 127 36.2
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 7.1e-09 63.9 122 37.7
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.2e-08 63.2 84 42.9
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 2.1e-08 62.4 86 43.0
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 4.6e-08 61.2 80 42.5
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 6.0e-08 60.8 127 35.4
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 7.8e-08 60.5 130 31.5
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 7.8e-08 60.5 83 41.0
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 7.8e-08 60.5 131 34.4
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 7.8e-08 60.5 131 34.4
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 7.8e-08 60.5 84 41.7
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 7.8e-08 60.5 126 34.9
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 1.3e-07 59.7 85 40.0
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.7e-07 59.3 131 33.6
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 1.7e-07 59.3 131 33.6
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.7e-07 59.3 131 33.6
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 6.6e-07 57.4 131 32.1
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 8.7e-07 57.0 85 41.2
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.1e-06 56.6 84 41.7
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.9e-06 55.8 86 36.0
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 1.9e-06 55.8 86 38.4
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 1.9e-06 55.8 43 55.8
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 7.3e-06 53.9 84 42.9
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 7.3e-06 53.9 85 35.3
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 7.3e-06 53.9 46 52.2
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 9.6e-06 53.5 52 50.0
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 9.6e-06 53.5 88 34.1


User provided reference genes

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