Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 6.4e-288 993.4 515 100.0
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.1e-239 833.2 516 86.0
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.1e-223 780.0 520 80.8
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 5.2e-181 638.3 522 69.0
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 2.0e-180 636.3 528 66.5
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 3.2e-178 629.0 521 69.1
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.9e-175 619.8 534 65.7
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.6e-174 616.7 520 66.3
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 4.4e-172 608.6 528 66.1
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.7e-168 596.7 525 64.6
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 3.3e-167 592.4 531 64.2
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.4e-162 577.0 522 64.2
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 2.5e-138 496.5 538 56.7
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 9.6e-135 484.6 545 54.3
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.2e-132 477.6 546 53.5
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 7.6e-132 474.9 542 55.5
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 2.0e-119 433.7 544 49.4
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 2.5e-119 433.3 530 51.9
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.3e-118 431.0 534 50.9
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 3.7e-118 429.5 541 52.3
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 9.1e-117 424.9 545 49.9
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 9.1e-117 424.9 535 50.3
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 4.5e-116 422.5 542 50.7
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 7.7e-116 421.8 291 75.9
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.2e-115 420.2 537 50.8
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 1.4e-114 417.5 533 50.1
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 7.2e-114 415.2 557 49.4
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 6.1e-113 412.1 534 48.5
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.8e-112 410.6 546 48.9
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 3.0e-112 409.8 533 50.7
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.5e-111 407.5 576 46.2
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.6e-111 406.8 541 50.3
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 5.7e-111 405.6 540 49.4
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.7e-110 404.1 536 49.8
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 8.2e-110 401.7 536 49.3
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 1.8e-109 400.6 580 46.7
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.1e-109 399.8 542 49.4
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.1e-109 399.4 539 49.7
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 5.3e-109 399.1 589 44.3
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.2e-108 397.9 560 48.9
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 1.5e-108 397.5 540 48.7
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 5.9e-108 395.6 472 51.3
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 7.7e-108 395.2 539 48.8
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.3e-107 394.4 537 47.7
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 6.5e-107 392.1 545 48.6
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 4.2e-106 389.4 531 47.5
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 7.2e-106 388.7 543 48.6
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 9.4e-106 388.3 543 47.0
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.1e-105 385.6 536 48.5
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.4e-104 384.4 454 54.2
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 3.0e-104 383.3 571 45.2
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 2.0e-103 380.6 571 45.4
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 2.6e-100 370.2 530 47.7
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 1.0e-99 368.2 592 42.9
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.0e-99 368.2 530 47.2
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.5e-98 363.6 539 46.2
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.6e-97 360.9 550 43.5
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 2.1e-97 360.5 538 45.5
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 8.0e-97 358.6 499 49.3
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 3.0e-96 356.7 535 44.7
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 4.0e-96 356.3 571 42.9
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.2e-95 354.8 535 44.5
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 1.5e-95 354.4 540 45.4
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 2.0e-95 354.0 532 44.5
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.7e-94 350.9 530 44.3
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.7e-94 350.9 537 43.8
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 2.2e-94 350.5 542 45.2
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 2.2e-94 350.5 529 43.7
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 4.8e-94 349.4 551 44.8
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 3.1e-93 346.7 550 43.6
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 4.1e-93 346.3 540 44.1
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 5.3e-93 345.9 536 44.8
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 7.0e-93 345.5 569 42.7
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 1.2e-92 344.7 575 43.1
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.2e-92 344.7 551 43.9
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 5.0e-91 339.3 549 42.8
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 5.5e-90 335.9 531 44.8
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.2e-89 334.7 535 40.7
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 2.7e-89 333.6 562 43.1
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 6.8e-88 328.9 525 42.1
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 5.7e-87 325.9 545 40.7
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 9.8e-87 325.1 536 41.2
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 1.3e-86 324.7 530 41.9
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 4.1e-85 319.7 529 42.0
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 1.2e-84 318.2 523 42.6
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 2.7e-84 317.0 523 42.6
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.0e-83 315.1 562 41.1
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.3e-83 314.7 522 42.1
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.8e-83 313.2 442 46.4
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 5.5e-82 309.3 529 39.9
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.2e-81 308.1 533 41.1
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 4.7e-81 306.2 523 40.3
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.2e-79 301.6 469 43.9
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 4.4e-79 299.7 533 40.3
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 9.8e-79 298.5 470 40.2
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 4.1e-77 293.1 537 38.2
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 9.2e-77 292.0 345 48.7
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 9.2e-77 292.0 532 40.6
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 7.3e-74 282.3 309 51.8
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 9.5e-74 282.0 539 39.9
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.3e-70 271.6 572 37.9
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 4.6e-68 263.1 530 37.4
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.0e-67 261.9 482 40.5
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.0e-67 261.9 482 40.5
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.6e-67 259.2 488 40.4
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 6.6e-67 259.2 546 39.0
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.5e-66 258.1 300 50.0
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 8.1e-65 252.3 562 37.0
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 1.8e-64 251.1 525 39.0
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 7.1e-61 239.2 383 42.3
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 1.4e-56 224.9 441 40.4
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 7.6e-55 219.2 442 40.3
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 4.6e-52 209.9 474 38.2
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 3.3e-50 203.8 396 39.9
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 5.8e-47 193.0 330 40.6
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.1e-37 162.2 566 29.7
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 6.6e-35 152.9 268 38.8
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 3.3e-34 150.6 574 28.6
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.8e-32 144.8 427 33.0
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 3.1e-32 144.1 519 28.5
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 2.1e-25 121.3 184 37.0
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 3.7e-25 120.6 252 38.9
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 3.8e-22 110.5 176 45.5
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 3.8e-22 110.5 233 36.1
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 2.6e-15 87.8 198 35.4
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 4.5e-15 87.0 204 36.8
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.7e-14 85.1 141 31.9
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 3.8e-14 84.0 61 62.3
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.1e-13 82.4 128 46.1
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 2.5e-13 81.3 308 29.9
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 104 46.2
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 104 46.2
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 104 46.2
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 104 46.2
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 104 46.2
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 104 46.2
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 2.5e-10 71.2 146 37.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 3.3e-10 70.9 116 42.2
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.7e-10 70.1 100 51.0
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 7.4e-10 69.7 254 26.8
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 1.3e-06 58.9 37 67.6


User provided reference genes

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