Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 6.6e-279 963.4 478 100.0
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 4.1e-273 944.1 478 95.4
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.4e-265 919.1 478 94.8
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 2.3e-263 911.8 478 94.8
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 6.6e-239 830.5 479 83.5
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 6.4e-234 813.9 480 82.9
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 8.4e-234 813.5 484 84.3
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 4.8e-229 797.7 476 81.1
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 7.4e-222 773.9 478 78.2
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 5.3e-220 767.7 479 80.2
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 7.1e-217 757.3 482 77.6
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.3e-215 753.1 478 76.2
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 7.4e-214 747.3 478 75.9
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 9.7e-214 746.9 482 75.9
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 6.3e-213 744.2 479 77.0
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.1e-212 741.9 480 74.8
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 5.3e-212 741.1 479 76.8
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 2.0e-211 739.2 483 75.2
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 7.7e-211 737.3 481 75.9
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 7.7e-211 737.3 483 74.3
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.9e-210 735.3 483 74.5
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 8.5e-210 733.8 485 74.2
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.1e-209 733.4 481 74.2
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 2.5e-209 732.3 484 73.3
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.1e-208 729.2 484 74.8
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 2.1e-208 729.2 482 74.3
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 2.1e-208 729.2 482 73.4
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 7.9e-208 727.2 483 75.2
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.0e-207 726.9 482 75.7
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.1e-206 723.4 484 74.4
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 5.7e-206 721.1 478 74.3
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 2.8e-205 718.8 487 72.9
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 8.2e-205 717.2 479 72.2
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.4e-204 715.7 482 74.5
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.5e-203 713.0 483 73.9
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 2.0e-203 712.6 483 73.7
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 5.9e-203 711.1 483 72.0
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 2.2e-202 709.1 483 71.6
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 8.5e-202 707.2 479 72.7
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.1e-201 706.8 478 71.8
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.9e-201 706.1 478 72.4
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.6e-200 703.0 478 70.9
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.1e-200 702.6 479 72.2
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.6e-200 701.8 478 72.4
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 3.6e-200 701.8 478 71.3
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.1e-198 696.8 484 70.0
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.1e-198 696.8 486 69.5
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 2.6e-198 695.7 476 68.9
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 4.4e-198 694.9 486 70.2
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 5.7e-198 694.5 491 69.7
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.8e-197 692.2 521 68.9
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 6.3e-197 691.0 486 69.1
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 8.2e-197 690.6 532 65.6
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.1e-196 690.3 487 68.6
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.4e-196 689.9 519 68.8
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 4.1e-196 688.3 481 69.2
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 2.0e-195 686.0 548 63.5
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.0e-194 683.7 479 68.9
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 6.5e-194 681.0 508 66.1
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.1e-193 680.2 502 69.7
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.9e-193 679.5 482 67.6
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 2.1e-192 676.0 521 63.0
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.3e-191 672.5 481 67.8
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.1e-190 670.2 481 68.0
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 3.3e-190 668.7 521 63.5
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.3e-189 666.8 522 63.2
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 2.8e-189 665.6 522 63.2
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.8e-189 665.6 437 72.5
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 6.3e-189 664.5 480 67.1
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.5e-187 658.7 482 67.8
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 5.0e-186 654.8 502 64.9
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 8.5e-186 654.1 478 66.3
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 4.2e-185 651.7 487 66.5
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 7.2e-185 651.0 521 61.4
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 9.4e-185 650.6 522 62.5
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.4e-183 646.7 546 61.0
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.4e-183 646.7 485 66.2
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.4e-183 646.7 485 66.2
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.8e-183 646.4 483 65.6
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 1.2e-182 643.7 440 70.9
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 3.4e-182 642.1 482 64.3
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 4.8e-181 638.3 484 64.5
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.0e-180 634.4 442 71.0
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 7.7e-179 630.9 480 64.2
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.0e-178 628.2 483 65.4
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 6.5e-178 627.9 481 65.1
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 3.2e-177 625.5 484 63.8
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.2e-176 623.6 479 64.3
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.6e-176 623.2 478 65.1
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.7e-176 622.5 481 63.6
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 8.0e-176 620.9 479 64.3
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 1.0e-175 620.5 486 63.2
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 1.8e-175 619.8 478 63.6
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 6.8e-175 617.8 482 65.4
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 4.9e-173 611.7 483 62.9
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.1e-172 610.5 494 63.4
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 1.4e-172 610.1 440 67.5
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.0e-170 604.0 478 62.3
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.7e-170 603.2 484 62.6
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 8.6e-170 600.9 484 62.2
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 8.6e-170 600.9 392 74.5
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 2.5e-169 599.4 484 62.0
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 1.2e-168 597.0 483 61.9
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 8.0e-168 594.3 481 61.3
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 1.8e-167 593.2 482 61.0
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 1.8e-167 593.2 482 61.0
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.8e-167 593.2 481 61.3
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 4.0e-167 592.0 484 61.6
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 5.2e-167 591.7 483 61.7
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 2.6e-166 589.3 392 73.5
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 9.8e-166 587.4 480 60.4
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 6.4e-165 584.7 482 60.6
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.4e-164 582.8 397 72.0
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 4.1e-164 582.0 411 71.0
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 5.9e-163 578.2 391 71.9
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 9.2e-156 554.3 496 55.0
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 2.0e-155 553.1 440 65.5
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 3.5e-155 552.4 290 87.2
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 5.0e-154 548.5 499 55.3
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 6.6e-154 548.1 440 65.0
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 5.6e-153 545.0 400 65.8
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 8.1e-152 541.2 442 63.3
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.4e-150 535.4 510 54.3
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 9.8e-150 534.3 353 76.8
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.7e-149 533.5 462 59.5
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.8e-144 516.2 410 64.6
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 8.1e-144 514.6 282 83.0
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 2.4e-140 503.1 400 61.0
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 9.2e-140 501.1 460 55.9
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 1.3e-138 497.3 479 53.2
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 5.2e-135 485.3 287 76.7
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 6.0e-131 471.9 299 70.9
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.2e-125 453.4 290 71.0
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.9e-117 425.6 395 53.2
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 4.2e-116 422.5 286 66.8
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 6.2e-112 408.7 290 64.5
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.8e-111 407.1 294 65.0
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.5e-107 392.9 298 65.8
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.3e-106 391.0 304 60.2
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.4e-100 370.9 477 41.3
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 2.1e-99 367.1 542 39.9
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 9.4e-92 341.7 373 52.0
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 4.3e-89 332.8 301 60.5
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-71 273.9 205 65.4
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.6e-70 271.2 430 40.9
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 4.0e-58 229.9 191 64.9
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 9.8e-57 225.3 179 64.8
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 2.2e-48 197.6 109 88.1
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 4.6e-46 189.9 191 54.5
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.8e-43 180.6 95 87.4
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.0e-42 178.7 93 88.2
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.4e-41 173.7 93 84.9
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.4e-41 173.3 148 64.9
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.9e-40 170.6 144 59.7
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.9e-40 170.6 144 59.7
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 3.2e-39 167.2 86 90.7
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 3.2e-39 167.2 86 90.7
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.7e-37 161.4 121 68.6
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 3.0e-37 160.6 147 57.1
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.5e-36 158.3 127 54.3
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.5e-33 148.3 174 46.6
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.8e-27 127.5 156 50.0
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 4.7e-27 126.7 66 92.4
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.1e-26 124.0 138 50.0
VMungo1309G0651 Vigna mungo HOM05D004150 ORTHO05D435762 1.2e-22 112.1 58 84.5
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 2.3e-21 107.8 164 41.5
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.0e-13 82.4 45 82.2
Psat5g113520 Pisum sativum HOM05D004150 ORTHO05D329029 1.7e-13 81.6 95 53.7
Glyma.11G158000 Glycine max HOM05D001519 ORTHO05D001403 2.7e-06 57.8 31 83.9


User provided reference genes

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