Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 2.1e-184 649.0 362 100.0
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 2.3e-151 539.3 333 87.1
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 2.2e-149 532.7 363 81.8
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 1.7e-141 506.5 364 82.7
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.2e-126 457.2 344 73.0
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.7e-125 453.4 337 74.5
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.1e-121 440.7 337 71.5
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 7.3e-121 438.0 295 79.0
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 2.3e-119 433.0 269 84.0
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 3.7e-117 425.6 333 69.4
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 2.0e-115 419.9 297 73.4
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 3.5e-115 419.1 276 78.3
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.0e-114 417.5 298 74.5
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.9e-114 415.6 339 69.0
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 5.0e-114 415.2 274 78.1
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 8.6e-114 414.5 298 74.2
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.1e-113 414.1 288 75.7
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.5e-113 413.7 306 71.2
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 2.5e-113 412.9 266 81.6
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 5.6e-113 411.8 284 75.4
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 5.6e-113 411.8 297 74.4
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.1e-112 409.8 275 76.7
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 2.1e-112 409.8 271 76.0
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 2.8e-112 409.5 296 72.3
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 3.6e-112 409.1 275 77.5
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 6.2e-112 408.3 297 72.7
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.1e-111 407.5 253 82.2
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 1.1e-111 407.5 263 79.8
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 1.4e-111 407.1 293 74.1
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 8.9e-111 404.4 296 72.0
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.2e-110 404.1 299 72.6
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 2.6e-110 402.9 274 76.3
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 2.6e-110 402.9 295 70.5
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 4.4e-110 402.1 257 80.5
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 7.5e-110 401.4 263 77.9
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 9.9e-110 401.0 290 73.4
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 1.3e-109 400.6 261 80.1
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 1.3e-109 400.6 294 71.8
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 1.7e-109 400.2 293 72.0
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 1.7e-109 400.2 290 75.5
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.2e-109 399.8 292 70.2
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 3.7e-109 399.1 292 70.2
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 8.3e-109 397.9 298 73.2
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 1.1e-108 397.5 262 77.5
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 1.9e-108 396.7 286 72.0
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 3.2e-108 396.0 262 77.5
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 5.4e-108 395.2 292 71.6
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 7.1e-108 394.8 266 77.8
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 9.2e-108 394.4 291 69.8
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.2e-107 394.0 267 76.4
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.2e-107 394.0 268 74.6
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.2e-107 394.0 331 67.4
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 1.6e-107 393.7 253 79.8
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.6e-107 393.7 294 72.1
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 1.6e-107 393.7 276 73.9
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.6e-107 393.7 261 78.5
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 3.5e-107 392.5 261 74.7
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 6.0e-107 391.7 251 80.5
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 6.0e-107 391.7 285 73.3
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 7.8e-107 391.3 294 72.1
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.7e-106 390.2 260 76.5
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 2.3e-106 389.8 294 72.4
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 1.5e-105 387.1 497 50.9
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 7.3e-105 384.8 289 69.9
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 7.3e-105 384.8 252 77.4
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.6e-104 383.6 257 77.4
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 3.6e-104 382.5 300 68.0
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 3.6e-104 382.5 267 75.3
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 4.7e-104 382.1 257 77.0
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.1e-103 380.9 277 72.2
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 6.8e-103 378.3 342 63.2
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 8.9e-103 377.9 260 73.5
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 9.9e-102 374.4 275 70.2
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 9.9e-102 374.4 262 73.7
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 4.9e-101 372.1 256 75.0
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 6.4e-101 371.7 261 72.4
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 6.4e-101 371.7 275 69.5
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.1e-100 370.9 275 69.5
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 1.9e-100 370.2 261 71.6
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 2.4e-100 369.8 356 59.0
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 2.4e-100 369.8 263 71.9
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 3.2e-100 369.4 349 62.2
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 4.1e-100 369.0 275 69.1
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 5.4e-100 368.6 261 72.0
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 7.1e-100 368.2 261 72.4
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 9.2e-100 367.9 295 67.5
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 9.2e-100 367.9 269 70.6
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.7e-98 363.6 276 71.7
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 3.9e-98 362.5 285 67.0
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 1.5e-97 360.5 261 70.9
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 1.5e-97 360.5 261 70.1
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 2.5e-97 359.8 241 75.9
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 2.1e-96 356.7 253 71.5
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 4.7e-96 355.5 238 76.9
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 4.7e-96 355.5 238 76.9
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 2.6e-94 349.7 240 75.8
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 1.1e-92 344.4 270 66.3
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 3.5e-91 339.3 248 69.8
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.3e-90 336.7 296 62.8
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 1.3e-88 330.9 252 65.1
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 3.4e-86 322.8 222 77.9
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 2.9e-85 319.7 246 72.0
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 3.9e-82 309.3 251 61.0
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 6.7e-82 308.5 222 75.7
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.3e-80 304.3 230 72.2
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 8.1e-80 301.6 202 79.2
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 4.5e-78 295.8 230 70.4
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.3e-77 294.3 242 62.4
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 1.4e-76 290.8 252 59.1
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 6.7e-74 282.0 178 80.3
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 4.3e-73 279.3 247 55.5
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 9.6e-73 278.1 277 57.4
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 2.8e-72 276.6 242 56.6
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 3.4e-70 269.6 247 57.1
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 1.3e-69 267.7 301 50.2
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 2.9e-61 240.0 185 72.4
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 6.9e-55 218.8 241 52.3
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 6.9e-55 218.8 203 64.0
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.2e-54 218.0 254 49.6
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 7.7e-54 215.3 199 60.3
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.6e-51 207.6 161 64.6
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 1.4e-47 194.5 255 46.7
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.4e-47 193.7 307 40.7
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 5.3e-47 192.6 182 58.8
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.1e-28 131.7 87 78.2
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 6.5e-21 105.9 116 54.3
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 1.8e-18 97.8 106 53.8
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 1.1e-15 88.6 71 64.8
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 7.0e-15 85.9 57 78.9
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 2.7e-14 84.0 52 82.7
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.1e-12 78.6 63 55.6
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 5.8e-09 66.2 48 58.3
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 2.9e-08 63.9 48 56.2
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 8.3e-08 62.4 208 31.2
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 1.4e-07 61.6 48 54.2
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 2.4e-07 60.8 42 69.0
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 4.6e-06 56.6 255 27.5


User provided reference genes

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