Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 7.5e-112 407.9 339 100.0
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 6.6e-100 368.2 344 93.3
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 2.4e-89 333.2 174 97.1
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 1.7e-87 327.0 170 97.1
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 5.4e-86 322.0 174 92.5
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 5.4e-86 322.0 174 92.5
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 1.6e-82 310.5 173 90.2
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 2.8e-82 309.7 173 90.2
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 2.8e-82 309.7 173 90.8
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 4.8e-82 308.9 172 90.1
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 1.4e-81 307.4 174 88.5
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 4.9e-79 298.9 174 86.2
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 6.4e-79 298.5 174 86.8
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 1.1e-78 297.7 174 86.2
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 1.1e-78 297.7 174 86.2
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 9.3e-78 294.7 174 85.6
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 9.3e-78 294.7 172 84.9
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.2e-77 294.3 172 86.6
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 1.2e-77 294.3 173 85.0
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 1.6e-77 293.9 174 85.1
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 7.9e-77 291.6 174 85.1
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 7.9e-77 291.6 174 86.2
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.9e-76 289.3 174 83.3
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.9e-76 289.3 174 83.3
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 5.1e-76 288.9 169 85.2
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 8.7e-76 288.1 174 83.3
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 1.5e-75 287.3 173 84.4
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.5e-75 287.3 174 83.3
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 1.9e-75 287.0 174 82.8
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 3.3e-75 286.2 174 82.8
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 4.3e-75 285.8 174 82.2
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 4.3e-75 285.8 174 83.3
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 7.4e-75 285.0 172 84.3
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 9.6e-75 284.6 174 81.0
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.6e-74 283.9 172 82.0
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 2.1e-74 283.5 172 83.1
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 2.8e-74 283.1 170 82.9
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 2.8e-74 283.1 168 83.9
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 3.7e-74 282.7 172 82.6
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.8e-74 282.3 169 83.4
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 6.2e-74 282.0 174 82.2
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 6.2e-74 282.0 173 84.4
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 1.1e-73 281.2 172 82.6
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.4e-73 280.8 171 84.2
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 1.8e-73 280.4 170 82.4
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.4e-73 280.0 169 82.8
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 6.9e-73 278.5 171 82.5
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 6.9e-73 278.5 174 82.2
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 2.6e-72 276.6 174 81.0
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 3.4e-72 276.2 167 84.4
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 5.8e-72 275.4 174 78.7
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 9.3e-70 268.1 174 78.7
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 9.3e-70 268.1 170 79.4
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 9.3e-70 268.1 170 79.4
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 1.2e-69 267.7 174 78.2
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 2.7e-69 266.5 150 91.3
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 3.5e-69 266.2 174 78.2
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 6.0e-69 265.4 172 80.2
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 1.9e-67 260.4 174 73.6
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 2.5e-67 260.0 174 73.0
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 3.3e-67 259.6 168 77.4
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 9.7e-67 258.1 174 73.0
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 9.7e-67 258.1 174 73.0
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 9.7e-67 258.1 174 73.0
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 9.7e-67 258.1 174 73.0
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 9.7e-67 258.1 174 73.0
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 2.2e-66 256.9 174 72.4
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 2.2e-66 256.9 172 76.7
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 6.3e-66 255.4 217 65.4
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 8.2e-66 255.0 168 76.2
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 1.4e-65 254.2 167 76.6
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 1.8e-65 253.8 174 72.4
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.8e-65 253.8 206 67.0
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.2e-64 251.1 174 71.8
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 1.2e-64 251.1 174 71.8
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 1.5e-64 250.8 174 74.1
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.0e-63 248.1 172 75.0
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 1.3e-63 247.7 198 67.2
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 2.9e-63 246.5 170 75.3
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 2.9e-63 246.5 156 80.1
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 5.0e-63 245.7 202 62.9
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 1.9e-62 243.8 167 73.1
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 5.5e-62 242.3 168 74.4
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 5.1e-60 235.7 149 81.2
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 5.1e-60 235.7 171 72.5
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 1.1e-59 234.6 170 71.8
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 1.3e-58 231.1 167 70.1
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 4.8e-58 229.2 152 77.6
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.1e-57 228.0 149 79.2
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 1.4e-57 227.6 169 68.6
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 9.1e-57 224.9 189 65.6
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 9.1e-57 224.9 160 75.0
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 7.7e-56 221.9 156 73.7
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 2.7e-53 213.4 173 63.6
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 6.7e-52 208.8 167 64.1
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 3.7e-50 203.0 150 70.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 6.3e-50 202.2 131 75.6
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.0e-45 185.3 119 80.7
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 3.1e-33 146.7 73 91.8
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.9e-31 140.2 108 67.6
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.9e-31 140.2 108 67.6
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 1.5e-30 137.9 93 81.7
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 4.0e-28 129.8 69 84.1
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 5.2e-28 129.4 123 60.2
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.4e-27 126.3 65 89.2
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 1.1e-25 121.7 163 42.9
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 3.1e-25 120.2 93 69.9
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 1.7e-23 114.4 79 79.7
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 3.3e-22 110.2 171 36.8
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 7.2e-22 109.0 71 67.6
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 9.8e-19 98.6 78 73.1
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 6.3e-18 95.9 78 70.5
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 2.4e-17 94.0 69 76.8
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.6e-16 91.3 75 61.3
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 4.5e-16 89.7 51 94.1
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 5.0e-15 86.3 64 75.0
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.4e-12 78.2 64 64.1
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 9.8e-11 72.0 40 92.5
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 2.2e-10 70.9 50 84.0
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 1.2e-08 65.1 39 87.2
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 1.2e-08 65.1 35 85.7
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 7.8e-08 62.4 31 87.1


User provided reference genes

Program Settings