Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 0.0e+00 1273.5 632 100.0
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 0.0e+00 1104.7 623 87.5
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 3.3e-294 1014.6 621 80.5
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 9.6e-294 1013.1 608 81.7
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 7.2e-257 890.6 619 71.1
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 7.7e-243 844.0 619 67.7
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 5.3e-236 821.2 481 86.3
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 3.0e-215 752.3 635 61.4
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 1.4e-207 726.9 603 61.5
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 4.0e-207 725.3 627 61.7
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 1.7e-205 719.9 609 60.3
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 1.5e-193 680.2 582 59.8
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 1.9e-193 679.9 645 58.1
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 1.9e-177 626.7 518 62.9
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 1.9e-169 600.1 624 51.9
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 3.4e-166 589.3 643 49.1
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 1.6e-160 570.5 680 47.4
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 9.7e-145 518.1 618 48.1
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 2.8e-144 516.5 587 46.7
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 3.7e-144 516.2 622 46.6
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 6.9e-143 511.9 568 48.2
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.2e-142 511.1 607 46.3
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 1.0e-141 508.1 425 64.5
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 2.7e-139 500.0 679 44.5
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 5.1e-138 495.7 604 47.5
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 8.8e-138 495.0 650 44.0
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 2.2e-136 490.3 614 45.9
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 8.2e-136 488.4 615 45.2
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 4.1e-135 486.1 613 44.9
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 3.4e-134 483.0 604 44.9
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 7.7e-134 481.9 605 45.8
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 1.4e-132 477.6 717 41.4
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 1.9e-132 477.2 592 44.9
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 2.5e-132 476.9 604 44.5
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 3.2e-132 476.5 628 44.1
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 2.0e-129 467.2 621 43.5
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 2.6e-129 466.8 598 44.3
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 4.8e-128 462.6 616 43.5
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 1.8e-127 460.7 624 44.7
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 8.5e-125 451.8 612 42.8
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 1.9e-124 450.7 628 42.0
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 1.9e-124 450.7 632 41.5
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 2.1e-123 447.2 593 43.7
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 2.1e-123 447.2 623 43.7
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 2.7e-123 446.8 595 44.2
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 1.4e-122 444.5 613 41.9
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.8e-122 444.1 595 43.9
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 3.9e-122 443.0 622 42.9
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 7.4e-121 438.7 631 41.8
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 1.3e-120 438.0 631 41.7
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 3.7e-120 436.4 590 42.0
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 1.1e-119 434.9 685 39.7
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 5.3e-119 432.6 648 41.5
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 2.6e-118 430.3 625 40.2
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 2.9e-117 426.8 619 42.6
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 3.8e-117 426.4 619 42.2
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 8.5e-117 425.2 620 41.8
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 3.3e-113 413.3 598 40.1
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 3.3e-113 413.3 448 54.2
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 2.8e-112 410.2 619 41.5
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 1.8e-111 407.5 594 40.7
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 4.1e-111 406.4 618 40.1
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 5.0e-109 399.4 617 42.1
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 1.1e-108 398.3 628 38.9
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 2.3e-106 390.6 641 38.1
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 3.4e-105 386.7 620 40.0
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 4.4e-105 386.3 588 39.5
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 9.8e-105 385.2 635 37.2
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.7e-104 383.3 624 36.2
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 4.1e-103 379.8 505 42.0
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 3.6e-99 366.7 599 39.6
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 5.2e-98 362.8 609 37.3
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 1.2e-94 351.7 439 46.7
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 4.3e-92 343.2 688 34.4
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 2.1e-91 340.9 546 37.2
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 8.0e-91 339.0 528 39.6
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 1.0e-90 338.6 418 45.5
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 1.4e-90 338.2 582 36.9
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 2.0e-89 334.3 645 35.0
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 6.4e-88 329.3 503 39.4
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 1.1e-87 328.6 506 39.9
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 2.0e-86 324.3 588 36.9
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 3.0e-85 320.5 635 33.7
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 1.5e-84 318.2 613 35.7
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 4.4e-81 306.6 614 34.5
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 3.7e-80 303.5 591 35.0
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 6.4e-80 302.8 592 37.5
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 8.3e-80 302.4 289 53.6
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 2.7e-78 297.4 590 35.1
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 6.6e-77 292.7 572 35.0
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 1.9e-76 291.2 623 34.7
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 8.1e-75 285.8 610 33.8
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 9.2e-71 272.3 599 34.6
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 1.0e-69 268.9 576 34.2
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 8.6e-69 265.8 613 33.3
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 1.9e-68 264.6 632 32.8
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 1.9e-68 264.6 643 32.3
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 3.3e-68 263.8 612 33.5
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 3.3e-68 263.8 607 33.3
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 4.3e-68 263.5 567 32.3
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 4.3e-68 263.5 448 37.3
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 3.6e-67 260.4 612 33.2
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 5.2e-66 256.5 588 31.5
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 7.6e-65 252.7 554 30.5
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.1e-63 248.8 577 33.3
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 2.4e-63 247.7 242 52.1
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 2.1e-62 244.6 217 53.0
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 2.7e-62 244.2 343 42.0
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.9e-61 240.4 264 45.5
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 1.9e-60 238.0 447 36.2
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 4.0e-58 230.3 447 33.8
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 1.5e-57 228.4 310 41.0
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 8.4e-56 222.6 496 30.0
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 1.1e-47 195.7 400 33.0
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 6.7e-45 186.4 321 38.9
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 1.5e-44 185.3 188 52.7
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 1.8e-42 178.3 164 51.2
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 3.1e-42 177.6 294 39.1
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 1.2e-41 175.6 479 31.3
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 3.8e-40 170.6 184 46.7
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 2.5e-39 167.9 442 32.6
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 9.3e-39 166.0 236 41.9
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 1.2e-38 165.6 231 42.0
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 1.2e-38 165.6 243 42.0
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 3.5e-38 164.1 610 25.9
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 7.9e-38 162.9 163 47.9
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 4.3e-36 157.1 163 47.9
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 6.2e-35 153.3 597 25.6
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 2.5e-31 141.4 162 46.9
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 1.2e-30 139.0 255 36.9
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 1.1e-26 125.9 172 43.0
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 8.5e-24 116.3 433 25.2
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 3.6e-22 110.9 139 46.0
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 2.0e-20 105.1 61 82.0
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 5.7e-20 103.6 334 26.6
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 5.3e-18 97.1 104 46.2
VMungo0540G0880 Vigna mungo HOM05D004843 ORTHO05D005833 9.1e-18 96.3 101 54.5
Oeu052598.1 Olea europaea HOM05D004843 ORTHO05D005833 3.9e-13 80.9 270 28.5
AagrBONN_evm.TU.Sc2ySwM_228.3857 Anthoceros agrestis HOM05D004843 ORTHO05D005833 2.0e-12 78.6 288 25.0
Oeu029262.1 Olea europaea HOM05D004843 ORTHO05D005833 9.1e-10 69.7 106 42.5
MBI02_g30879_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 8.5e-08 63.2 187 26.7
Aqoxy7G02744 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 4.2e-07 60.8 67 37.3
Haze_09369 Corylus avellana HOM05D004843 ORTHO05D164047 4.2e-07 60.8 39 59.0


User provided reference genes

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