Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 2.6e-257 891.7 518 100.0
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 4.1e-210 734.9 520 77.5
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 3.5e-185 652.1 515 68.5
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 2.1e-177 626.3 510 67.8
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 2.6e-148 529.6 451 64.1
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.3e-134 484.2 505 56.8
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 7.0e-125 451.8 518 52.9
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 2.5e-122 443.4 530 49.8
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 1.7e-78 297.7 486 40.9
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 6.0e-76 289.3 528 38.6
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 7.3e-74 282.3 507 40.2
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 4.7e-73 279.6 228 65.8
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 4.7e-73 279.6 507 36.5
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 2.2e-70 270.8 228 64.0
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 6.4e-70 269.2 478 39.1
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 1.9e-69 267.7 478 37.0
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 1.9e-69 267.7 509 35.2
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 7.1e-69 265.8 229 64.2
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.6e-65 254.6 472 36.2
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 6.9e-64 249.2 519 34.1
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 9.0e-64 248.8 490 35.9
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 1.2e-63 248.4 519 34.1
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 4.9e-62 243.0 442 38.2
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.4e-61 241.5 515 33.8
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 1.2e-60 238.4 481 34.9
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 3.6e-57 226.9 468 35.7
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 5.3e-56 223.0 227 57.7
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.2e-55 221.9 227 57.7
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 3.4e-55 220.3 493 33.7
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 3.4e-55 220.3 481 34.1
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.9e-53 214.5 440 34.8
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 3.5e-52 210.3 489 34.4
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 1.5e-50 204.9 517 30.8
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 6.4e-46 189.5 580 35.7
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 7.1e-45 186.0 527 31.9
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.6e-44 184.9 495 32.7
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.6e-44 184.9 471 31.8
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 8.7e-43 179.1 225 48.9
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 2.1e-41 174.5 492 32.3
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.1e-40 172.2 207 50.7
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 4.2e-37 160.2 193 47.2
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 2.1e-36 157.9 207 47.3
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 6.0e-36 156.4 197 46.7
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 8.7e-35 152.5 228 43.0
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 1.5e-34 151.8 476 27.9
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 5.7e-34 149.8 207 45.4
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 7.4e-34 149.4 464 28.2
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 4.8e-33 146.7 169 49.7
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 2.6e-31 141.0 189 43.4
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.0e-30 139.0 200 40.5
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 5.0e-30 136.7 189 42.3
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 6.5e-30 136.3 486 27.0
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 8.5e-30 136.0 171 45.0
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 1.4e-29 135.2 486 26.7
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 1.9e-29 134.8 175 47.4
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 2.5e-29 134.4 454 25.8
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.2e-28 132.1 486 26.5
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.2e-28 132.1 197 42.6
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 1.2e-28 132.1 161 46.6
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.1e-28 131.3 179 43.0
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.3e-27 127.9 173 44.5
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 3.9e-27 127.1 175 42.9
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 8.8e-27 125.9 207 37.2
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.1e-26 125.6 201 38.8
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.9e-26 124.8 148 44.6
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 2.5e-26 124.4 191 41.4
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 3.3e-26 124.0 192 43.2
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 4.3e-26 123.6 191 43.5
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 4.3e-26 123.6 201 38.8
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 5.7e-26 123.2 140 44.3
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 1.3e-25 122.1 164 40.9
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 1.7e-25 121.7 189 36.0
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.2e-25 121.3 225 36.9
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 2.8e-25 120.9 154 45.5
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 4.8e-25 120.2 189 35.4
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 1.1e-24 119.0 170 46.5
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 3.1e-24 117.5 187 41.7
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 3.1e-24 117.5 191 41.9
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 4.1e-24 117.1 190 39.5
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 6.9e-24 116.3 182 42.3
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 1.5e-23 115.2 168 38.7
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 2.0e-23 114.8 94 54.3
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 2.0e-23 114.8 172 40.7
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 3.4e-23 114.0 193 39.9
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 5.9e-23 113.2 221 35.3
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 7.7e-23 112.8 182 39.0
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.0e-22 112.5 181 43.1
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 1.0e-22 112.5 226 36.3
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 1.7e-22 111.7 185 39.5
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 2.2e-22 111.3 105 45.7
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 2.2e-22 111.3 155 42.6
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 2.9e-22 110.9 190 36.8
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 3.8e-22 110.5 90 52.2
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 6.5e-22 109.8 202 39.6
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 6.5e-22 109.8 218 38.5
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 8.5e-22 109.4 99 52.5
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 8.5e-22 109.4 174 37.4
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 1.4e-21 108.6 202 35.6
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 1.9e-21 108.2 209 35.9
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 5.5e-21 106.7 115 42.6
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 5.5e-21 106.7 186 38.7
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 7.2e-21 106.3 173 42.2
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.2e-20 105.5 112 45.5
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.4e-19 102.1 157 41.4
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 1.5e-18 98.6 196 33.7
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 3.3e-18 97.4 189 34.9
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 4.4e-18 97.1 173 35.3
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 9.7e-18 95.9 218 36.7
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.7e-17 95.1 98 49.0
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 4.8e-17 93.6 79 46.8
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 6.3e-17 93.2 83 51.8
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 1.1e-16 92.4 174 33.9
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 7.0e-16 89.7 77 58.4
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 5.9e-15 86.7 105 41.0
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.0e-14 85.9 86 45.3
Psat0s911g0040 Pisum sativum HOM05D006067 ORTHO05D007327 2.2e-14 84.7 143 46.9
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.9e-13 81.6 72 54.2
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 1.2e-12 79.0 199 29.6
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 3.6e-12 77.4 187 30.5
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 1.8e-11 75.1 109 38.5
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 5.2e-11 73.6 68 44.1
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 5.2e-11 73.6 64 53.1
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 1.5e-10 72.0 113 36.3
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 9.7e-10 69.3 66 45.5
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.6e-07 62.0 49 53.1
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 2.9e-06 57.8 60 43.3
FAN21G2926 Fragaria x ananassa HOM05D006067 ORTHO05D007327 6.5e-06 56.6 140 30.0


User provided reference genes

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